BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0886300 Os01g0886300|AK065093
(290 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299 258 2e-69
AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287 243 6e-65
AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284 241 4e-64
AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309 240 7e-64
AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316 238 4e-63
AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805 104 6e-23
>AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299
Length = 298
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/253 (56%), Positives = 166/253 (65%), Gaps = 21/253 (8%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPVNGQPMDLE 106
QKL PF+QV+P C RLLN EI R SS P D +R EHGSP R G P NG+ +DLE
Sbjct: 54 QKLGPFLQVMPNCCRLLNHEIRRVSSFP------DLDRYEHGSPFRSLGQPTNGK-LDLE 106
Query: 107 GWSGMQTENMRVLQASS-------MGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGR 159
GWS MQ E LQ +S +GW G P + YP+YNFVGR
Sbjct: 107 GWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGR 166
Query: 160 LLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPA 219
+LGPRGNSLKRVE +T CRV+IRGRGSVKD+VKE+KL+ KPGYEHL EPLHVL+EAE P
Sbjct: 167 ILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPE 226
Query: 220 DIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXX----XXXXX 275
DII++RL AV LE LLKP+DESMD+YK++QL+ELA LNGTLREE
Sbjct: 227 DIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSM 286
Query: 276 XXFNSTGMKRAKT 288
FNS KRAKT
Sbjct: 287 SPFNS---KRAKT 296
>AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287
Length = 286
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 128/246 (52%), Positives = 158/246 (64%), Gaps = 4/246 (1%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSP--LRLPGLPVNGQPMD 104
QKL PF+QVLP C+RLLNQE+ R S + N F D +R+ H SP + L N
Sbjct: 41 QKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTG 100
Query: 105 LEGWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPR 164
L GW+G+ E + +M W G P + YPN+NFVGRLLGPR
Sbjct: 101 LGGWNGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPR 160
Query: 165 GNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDT 224
GNSLKRVEA+T CRV+IRG+GS+KD KEDKLR +PGYEHLNE LH+L+EA+ PA I++
Sbjct: 161 GNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEI 220
Query: 225 RLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNG-TLREEXXXXXXXXXXXXFNSTGM 283
RL QA I+E+LLKP+DES D+ K+QQLRELA+LN LREE FNS+G
Sbjct: 221 RLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG- 279
Query: 284 KRAKTG 289
KR KTG
Sbjct: 280 KRPKTG 285
>AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284
Length = 283
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/246 (53%), Positives = 160/246 (65%), Gaps = 4/246 (1%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEH--GSPLRLPGLPVNGQPMD 104
QKL PF+QVLP C+RLLNQEI R + + PN F D +R+ H SP+ P L N
Sbjct: 40 QKLGPFMQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGG 99
Query: 105 LEGWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPR 164
L GW+G+ E + +M W G PA + YPN+NFVGRLLGPR
Sbjct: 100 LGGWNGLPPERIGGPHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPR 159
Query: 165 GNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDT 224
GNSLKRVEA+T CRVYIRG+GS+KD KE+KL+ KPGYEHLNE LH+L+EA+ P DI+D
Sbjct: 160 GNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDI 219
Query: 225 RLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXXXXXXXXXFNSTGMK 284
+L QA I+E+L+KP+DES DY K+QQLRELA+LN LRE FNS MK
Sbjct: 220 KLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLREN--SPGPSGSVSPFNSNAMK 277
Query: 285 RAKTGR 290
R KTGR
Sbjct: 278 RPKTGR 283
>AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309
Length = 308
Score = 240 bits (612), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 155/242 (64%), Gaps = 5/242 (2%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPVNGQPMDLE 106
KL PF+ VLP RL+NQEILR ++L N + R +H SPL G+ N + D+
Sbjct: 70 HKLTPFLPVLPHVCRLMNQEILRVTTL--LENALSQSRFDHPSPLASGGIFQNSR-ADMN 126
Query: 107 GWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPRGN 166
GW+ V + + W P + YPNYNFVGRLLGPRGN
Sbjct: 127 GWASQFPSERSVSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGN 186
Query: 167 SLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRL 226
SLKRVEAST CRV IRGRGS+KD +KED +R KPGYEHLNEPLH+LVEAE P +I+D RL
Sbjct: 187 SLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARL 246
Query: 227 NQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXXXXXXXXXFNSTGMKRA 286
QA IL+DLL P++E+ D+YKKQQLRELA+LNG+LREE +NS GMKRA
Sbjct: 247 MQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREE--GSPMSGSISPYNSLGMKRA 304
Query: 287 KT 288
KT
Sbjct: 305 KT 306
>AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316
Length = 315
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 153/242 (63%), Gaps = 3/242 (1%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPVNGQPMDLE 106
KL PF+ VLP RLLNQEILR ++L N + ++H SPL G+ N + D+
Sbjct: 74 HKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLASGGIFQNAR-ADMN 132
Query: 107 GWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPRGN 166
GW+ V + W P + YPN+NFVGRLLGPRGN
Sbjct: 133 GWASQFPSERSVPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGN 192
Query: 167 SLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRL 226
SLKRVEAST CRV IRGRGS+KD +KE+ +R KPGYEHLNEPLH+LVEAE P +I+D RL
Sbjct: 193 SLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARL 252
Query: 227 NQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXXXXXXXXXFNSTGMKRA 286
QA IL+DLL P++E+ D YKKQQLRELA+LNGTLREE +NS GMKRA
Sbjct: 253 MQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREE--GSPMSGSVSPYNSLGMKRA 310
Query: 287 KT 288
KT
Sbjct: 311 KT 312
>AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805
Length = 804
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 6/115 (5%)
Query: 151 YPNYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLH 210
+P YNF+G ++GPRGN+ KR+E T ++ IRG+GSVK+ + K +D NE LH
Sbjct: 252 FPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK-KDLKYDPSENEDLH 310
Query: 211 VLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265
VLVEAE L A ++E LL+P+DE ++ +K+QQLRELA LNGT+R+E
Sbjct: 311 VLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTIRDE 360
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,869,275
Number of extensions: 186775
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 6
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)