BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0209800 Os07g0209800|AB118012
(205 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0209800 Similar to HALF-1 373 e-104
Os03g0809200 Similar to Transcription factor EmBP-1 (Fragment) 88 4e-18
AY072932 86 1e-17
Os02g0128200 Similar to Transcription factor HBP-1a (Histon... 86 2e-17
Os12g0233800 Similar to DNA-binding factor of bZIP class 82 3e-16
Os03g0239400 Similar to Transcription factor HBP-1a(C14) 75 4e-14
Os05g0569300 Similar to G-box binding factor 1 74 6e-14
Os01g0658900 OSBZ8 70 1e-12
>Os07g0209800 Similar to HALF-1
Length = 205
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/205 (90%), Positives = 186/205 (90%)
Query: 1 PSQATLVPYAAVESPYPLKGRSASKLPVSAPGRAALPNATPNLNIGIDLWSTPPALAVPA 60
PSQATLVPYAAVESPYPLKGRSASKLPVSAPGRAALPNATPNLNIGIDLWSTPPALAVPA
Sbjct: 1 PSQATLVPYAAVESPYPLKGRSASKLPVSAPGRAALPNATPNLNIGIDLWSTPPALAVPA 60
Query: 61 GQGEASPGLALARRDGVAHLDXXXXXXXXXXQSNRESARRSRLRKQQECEELARKVAELT 120
GQGEASPGLALARRDGVAHLD QSNRESARRSRLRKQQECEELARKVAELT
Sbjct: 61 GQGEASPGLALARRDGVAHLDERELKRERRKQSNRESARRSRLRKQQECEELARKVAELT 120
Query: 121 TENSALRSELDQLKKACEDMEAENTRLMGDKAQYKGPTVTTTLGMSIDSSKTQHHDDEGQ 180
TENSALRSELDQLKKACEDMEAENTRLMGDKAQYKGPTVTTTLGMSIDSSKTQHHDDEGQ
Sbjct: 121 TENSALRSELDQLKKACEDMEAENTRLMGDKAQYKGPTVTTTLGMSIDSSKTQHHDDEGQ 180
Query: 181 LHKXXXXXXXXXYVGGSHKPEANSR 205
LHK YVGGSHKPEANSR
Sbjct: 181 LHKNTNNNSNGNYVGGSHKPEANSR 205
>Os03g0809200 Similar to Transcription factor EmBP-1 (Fragment)
Length = 98
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 54/72 (75%)
Query: 103 LRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRLMGDKAQYKGPTVTTT 162
L QQECEEL++KV ELT NS L +ELD+LKK CEDMEAEN++LM + Q +G +V T
Sbjct: 11 LHCQQECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAENSQLMDEMVQSEGSSVIAT 70
Query: 163 LGMSIDSSKTQH 174
L + ID+SK +H
Sbjct: 71 LSVKIDTSKDRH 82
>AY072932
Length = 73
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 133 LKKACEDMEAENTRLMGDKAQYKGPTVTTTLGMSIDSSKTQHHDDEGQLHKXXXXXXXXX 192
LKK C + + GDK QYKGPTVTT GMSIDSSKTQHHDDE QLHK
Sbjct: 2 LKKPC-GIWIQRYTTDGDKLQYKGPTVTTHFGMSIDSSKTQHHDDEAQLHKNINNNSNGN 60
Query: 193 YVGGSHKPEANSR 205
YVGGSH PEA R
Sbjct: 61 YVGGSHTPEAYFR 73
>Os02g0128200 Similar to Transcription factor HBP-1a (Histone-specific
transcription factor HBP1)
Length = 347
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 40 TPNLNIGIDLWSTPPALAVPAGQGEASPGLALARRDGVAHLDXXXXXXXXXXQSNRESAR 99
T NLNIG+D W + VPA G+AS G + D QSNRESAR
Sbjct: 207 TTNLNIGMDYWGAAGSSPVPAMHGKASSGSVRGEQ-----WDERELKKQKRKQSNRESAR 261
Query: 100 RSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRL 147
RSRLRKQ ECEEL+ + L ENS+LR+EL+++KK E + + N L
Sbjct: 262 RSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHNASL 309
>Os12g0233800 Similar to DNA-binding factor of bZIP class
Length = 390
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 20/162 (12%)
Query: 26 LPVSAPGRAALPNATPNLNIGIDLWSTPPALAVPAGQGEASP----GLALARRDGVAHLD 81
+P+++ G +P T NLNIG+D W+ A + PA G+A+P G + V D
Sbjct: 238 MPMTSSG--PVPAPTTNLNIGMDYWANT-ASSTPAIHGKATPTAAPGSMVPGEQWVQ--D 292
Query: 82 XXXXXXXXXXQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDME 141
QSNRESARRSRLRKQ ECEELA++ L EN++LR E+++++K +++
Sbjct: 293 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDELL 352
Query: 142 AENTRL---MGDKAQYKGPTVTTTLGMSIDSSKTQHHDDEGQ 180
++N+ L + DK Q+K T G+ +K QH D+ Q
Sbjct: 353 SKNSSLKEKLEDK-QHK----TDEAGV---DNKLQHSGDDSQ 386
>Os03g0239400 Similar to Transcription factor HBP-1a(C14)
Length = 383
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 43 LNIGIDLWSTPPALAVPAGQGEASPGLALAR--RDGV----AHLDXXXXXXXXXXQSNRE 96
+N+G+D W TP ++ + + A+P A + RD V A D QSNRE
Sbjct: 255 VNMGMDYWGTPTSVPM-HNKVIAAPASAPSSNSRDVVLSDPAIQDERELKRQKRKQSNRE 313
Query: 97 SARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRL 147
SARRSRLRKQ E EE+A + L ENS+L+ EL QL++ C + +ENT L
Sbjct: 314 SARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSENTTL 364
>Os05g0569300 Similar to G-box binding factor 1
Length = 380
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 29 SAPGRAALPNATPNLN---IGIDLWSTPPALAVPAGQGEASPGLALARRDGVAHLDXXXX 85
S P + P+AT N +G + S PP + VP+ G ++ L R+
Sbjct: 199 SFPAQVIRPSATNVANSRALGTPI-SPPPGVIVPSHTGVSTELLIKDERE---------L 248
Query: 86 XXXXXXQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENT 145
QSNRESARRSRLRKQ E E+LA +V LT EN++LRSE+ +L ++ E + EN+
Sbjct: 249 KREKRKQSNRESARRSRLRKQAETEDLATQVESLTAENTSLRSEISRLSESSEKLRLENS 308
Query: 146 RLMGDKAQYKGPTVTTTLGMSIDSSKT 172
LMG + K P +T S+ + T
Sbjct: 309 ALMG---KLKDPAASTQAETSLQKTTT 332
>Os01g0658900 OSBZ8
Length = 360
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 92 QSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRLMGDK 151
QSNRESARRSRLRKQ E EELARKV LT EN++LR E+ +L ++ + + EN+ LM +K
Sbjct: 233 QSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALM-EK 291
Query: 152 AQYKGP 157
GP
Sbjct: 292 LTETGP 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.125 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,567,604
Number of extensions: 258714
Number of successful extensions: 1268
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1265
Number of HSP's successfully gapped: 8
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 153 (63.5 bits)