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Os07g0209800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HALF-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0145) R2 : 0.00286
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0349 (0.0305) R2dN8 : 0.0037 R2N8 : 0.00286
σ : 0.273
deviance : 34.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.42 0.19 11.5 0.121 0.445 0.241 -0.0539 1.32 0.00155 3.42 29.6 1110 -- --
16.72 0.19 11.5 0.39 0.431 0.364 -0.0715 -- 0.0413 3.37 29.74 1112 -- --
16.43 0.189 11.5 0.118 0.445 0.24 -- 1.34 0.00136 3.41 29.62 1109 -- --
16.71 0.19 11.5 0.387 0.442 0.385 -- -- 0.0291 3.37 29.8 1105 -- --
21.12 0.214 11.5 0.324 -- 0.438 -- 0.265 0.101 -- 28.1 288 -- --
22.65 0.223 11.5 0.276 0.409 -- -0.185 -- 0.0557 3.94 -- -- -- --
22.75 0.223 11.5 0.278 0.407 -- -- -- 0.0567 3.92 -- -- -- --
21.15 0.214 11.5 0.378 -- 0.435 -- -- 0.121 -- 28.03 282 -- --
20.31 0.21 11.5 -- 0.446 0.309 -- -- -0.0428 3.56 30.5 1123 -- --
31.84 0.264 11.5 0.295 -- -- -- -- 0.0676 -- -- -- -- --
24.78 0.233 11.5 -- 0.413 -- -- -- 0.0258 3.92 -- -- -- --
24.81 0.232 11.5 -- -- 0.43 -- -- 0.0715 -- 28.4 306 -- --
34.13 0.273 11.5 -- -- -- -- -- 0.0349 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.45 humidity 60.0 14400 < th dose independent rect. 17 1
2 15.86 humidity 60.0 14400 > th dose independent rect. 17 1
3 15.91 humidity 60.0 14400 < th dose independent rect. 17 16
5 15.96 humidity 50.0 14400 > th dose independent rect. 16 19
20 16.17 humidity 60.0 14400 > th dose independent rect. 17 15
21 16.19 humidity 60.0 14400 > th dose independent rect. 17 7
23 16.20 humidity 60.0 14400 > th dose independent rect. 17 5
34 16.29 humidity 50.0 14400 < th dose independent rect. 16 19
35 16.30 humidity 50.0 4320 > th dose independent rect. 15 1
36 16.46 humidity 60.0 14400 < th dose dependent rect. 16 18
37 16.54 humidity 50.0 14400 < th dose independent sin 11 NA
38 16.56 humidity 60.0 14400 < th dose dependent rect. 16 2
39 16.59 temperature 25.0 1440 > th dose dependent rect. 6 4
47 16.65 temperature 25.0 1440 > th dose dependent rect. 8 1
56 16.71 humidity 50.0 14400 < th dose independent rect. 15 3
78 16.75 humidity 60.0 14400 < th dose dependent rect. 16 15
93 16.76 wind 9.0 14400 > th dose dependent rect. 18 17
115 16.90 humidity 50.0 4320 > th dose independent rect. 14 3
116 16.90 temperature 30.0 720 < th dose independent rect. 15 14
120 16.92 temperature 10.0 1440 > th dose dependent rect. 11 1
123 16.93 temperature 30.0 1440 < th dose independent rect. 10 1
127 16.94 temperature 25.0 1440 > th dose dependent rect. 6 13
142 16.97 temperature 30.0 1440 > th dose independent rect. 10 1
143 16.97 temperature 30.0 1440 > th dose independent rect. 9 3
150 16.98 temperature 25.0 1440 > th dose dependent sin 1 NA
159 16.99 temperature 30.0 1440 < th dose independent rect. 4 12
161 16.99 temperature 30.0 1440 < th dose independent rect. 1 15
162 16.99 temperature 30.0 1440 < th dose independent rect. 20 20
172 17.00 temperature 30.0 1440 < th dose independent rect. 9 7
222 17.02 radiation 10.0 1440 > th dose independent rect. 17 13
223 17.02 temperature 30.0 1440 < th dose independent rect. 19 17
227 17.02 temperature 10.0 1440 > th dose dependent rect. 9 5
237 17.03 temperature 30.0 1440 < th dose independent sin 4 NA
242 17.03 temperature 30.0 1440 < th dose independent rect. 5 7
263 17.03 wind 9.0 43200 > th dose dependent rect. 20 1
291 17.05 temperature 25.0 1440 > th dose dependent rect. 17 1
327 17.07 radiation 10.0 1440 > th dose independent rect. 17 1
381 17.09 temperature 30.0 1440 < th dose independent rect. 14 22
388 17.09 wind 9.0 14400 > th dose dependent rect. 18 12
401 17.10 precipitation 0.1 4320 > th dose independent rect. 8 10
423 17.11 temperature 10.0 1440 > th dose dependent rect. 8 11
433 17.12 temperature 30.0 1440 > th dose independent rect. 9 7
439 17.12 precipitation 0.1 4320 < th dose independent rect. 8 10
458 17.12 precipitation 0.1 4320 < th dose dependent rect. 8 10
486 17.13 humidity 50.0 4320 > th dose independent rect. 15 16
498 17.13 temperature 30.0 1440 > th dose independent rect. 14 22
523 17.14 temperature 30.0 1440 < th dose independent no NA NA
524 17.14 humidity 50.0 4320 > th dose independent rect. 15 6
529 17.14 humidity 50.0 4320 > th dose independent rect. 15 11
616 17.14 temperature 10.0 1440 > th dose dependent rect. 17 1
741 17.17 temperature 30.0 1440 > th dose independent sin 3 NA
772 17.17 temperature 30.0 1440 < th dose independent rect. 11 23
788 17.17 temperature 25.0 1440 > th dose dependent rect. 17 21
802 17.18 precipitation 0.1 4320 > th dose independent rect. 10 8
841 17.19 temperature 30.0 720 < th dose independent sin 15 NA
880 17.20 temperature 25.0 1440 > th dose dependent no NA NA
902 17.20 temperature 25.0 1440 > th dose dependent rect. 13 23
908 17.21 precipitation 0.1 4320 < th dose independent rect. 10 8
931 17.21 precipitation 0.1 4320 < th dose dependent rect. 10 8
937 17.21 wind 9.0 14400 > th dose dependent rect. 20 15
988 17.23 temperature 30.0 1440 > th dose independent no NA NA
991 17.23 temperature 30.0 720 < th dose independent rect. 15 5