BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0209800 Os07g0209800|AB118012
(205 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35530.1 | chr2:14923280-14926025 REVERSE LENGTH=410 97 8e-21
AT1G32150.1 | chr1:11566022-11568317 FORWARD LENGTH=390 86 1e-17
AT4G36730.1 | chr4:17309850-17311752 REVERSE LENGTH=316 80 8e-16
AT2G46270.1 | chr2:19000859-19002901 FORWARD LENGTH=383 72 2e-13
AT4G01120.1 | chr4:481929-483970 REVERSE LENGTH=361 65 2e-11
AT1G19490.1 | chr1:6751953-6753959 REVERSE LENGTH=472 49 1e-06
AT1G68880.1 | chr1:25894499-25894915 REVERSE LENGTH=139 49 2e-06
AT3G30530.1 | chr3:12139512-12140033 FORWARD LENGTH=174 47 5e-06
AT5G15830.1 | chr5:5168591-5169151 FORWARD LENGTH=187 47 6e-06
>AT2G35530.1 | chr2:14923280-14926025 REVERSE LENGTH=410
Length = 409
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 13/131 (9%)
Query: 26 LPVSAPGRAALPNATPNLNIGIDLWSTPPALAVPAGQGEAS---PGL-ALARRDGVAH-- 79
+P++A A +P NLNIG+D W P + +P G+ S PG+ A RDG H
Sbjct: 242 MPMTA---AGVPGPPTNLNIGMDYWGAPTSAGIPGMHGKVSTPVPGVVAPGSRDG-GHSQ 297
Query: 80 ---LDXXXXXXXXXXQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKA 136
D QSNRESARRSRLRKQ EC+ELA++ L EN+ LR+E+++LK
Sbjct: 298 PWLQDDRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQ 357
Query: 137 CEDMEAENTRL 147
CE++ ENT L
Sbjct: 358 CEELTTENTSL 368
>AT1G32150.1 | chr1:11566022-11568317 FORWARD LENGTH=390
Length = 389
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 18/128 (14%)
Query: 26 LPVSAPGRAALPNATPNLNIGIDLWSTPPALAVPAGQGEAS---PGLALARRDGVAHL-- 80
+PVSA G +P NLNIG+D WS G G S PG+ + L
Sbjct: 243 MPVSATG---VPGPPTNLNIGMDYWS---------GHGNVSGAVPGVVVDGSQSQPWLQV 290
Query: 81 -DXXXXXXXXXXQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACED 139
D QSNRESARRSRLRKQ EC+ELA++ L ENS+LR+E+++LK E+
Sbjct: 291 SDEREIKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEE 350
Query: 140 MEAENTRL 147
+ AEN+ L
Sbjct: 351 LLAENSSL 358
>AT4G36730.1 | chr4:17309850-17311752 REVERSE LENGTH=316
Length = 315
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 21/106 (19%)
Query: 42 NLNIGIDLWSTPPALAVPAGQGEASPGLALARRDGVAHLDXXXXXXXXXXQSNRESARRS 101
NLNIG+DLWS+ + GV D QSNRESARRS
Sbjct: 201 NLNIGMDLWSS---------------------QAGVPVKDERELKRQKRKQSNRESARRS 239
Query: 102 RLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRL 147
RLRKQ ECE+L ++V L+ EN +LR EL +L C+ +++EN +
Sbjct: 240 RLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSI 285
>AT2G46270.1 | chr2:19000859-19002901 FORWARD LENGTH=383
Length = 382
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 42/57 (73%)
Query: 92 QSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRLM 148
QSNRESARRSRLRKQ E EELARKV LT EN ALRSEL+QL + + + N L+
Sbjct: 267 QSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANATLL 323
>AT4G01120.1 | chr4:481929-483970 REVERSE LENGTH=361
Length = 360
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 92 QSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRLMGD- 150
QSNRESARRSRLRKQ E E+L+ KV L EN +LRS+L QL E + EN ++
Sbjct: 257 QSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQL 316
Query: 151 KAQYKGPTVT----TTLGMSIDSSKTQHH 175
KAQ G T S+ SKT H
Sbjct: 317 KAQATGKTENLISRVDKNNSVSGSKTVQH 345
>AT1G19490.1 | chr1:6751953-6753959 REVERSE LENGTH=472
Length = 471
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 93 SNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRL 147
+NRESAR++ R+Q CEEL++K A+LT EN LR E D K + +E N L
Sbjct: 167 ANRESARQTIRRRQAMCEELSKKAADLTYENENLRREKDWALKEFQSLETINKHL 221
>AT1G68880.1 | chr1:25894499-25894915 REVERSE LENGTH=139
Length = 138
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 93 SNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRL 147
SNRESARRSR+RKQ+ EEL + +L +N +L EL Q ++ E + EN +L
Sbjct: 54 SNRESARRSRMRKQRHMEELWSMLVQLINKNKSLVDELSQARECYEKVIEENMKL 108
>AT3G30530.1 | chr3:12139512-12140033 FORWARD LENGTH=174
Length = 173
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 93 SNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRLMGDKA 152
SNRESARRSR+RKQ+ +EL +V L EN L +L+ L ++ + + EN +L +
Sbjct: 88 SNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHDKVLQENAQLKEETF 147
Query: 153 QYK 155
+ K
Sbjct: 148 ELK 150
>AT5G15830.1 | chr5:5168591-5169151 FORWARD LENGTH=187
Length = 186
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 93 SNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRL 147
SNRESARRSR+RKQ+ +EL +VA L +EN L +L+Q+ + + EN+ L
Sbjct: 81 SNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSDNNDLVIQENSSL 135
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.125 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,842,606
Number of extensions: 137448
Number of successful extensions: 685
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 13
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 109 (46.6 bits)