Os02g0128200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1).
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Os02g0128200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.28 | 0.487 | 10.5 | -1.73 | 1.24 | 1.57 | 1.44 | -0.597 | -0.211 | 3.21 | 34.34 | 11 | -- | -- |
| 107.61 | 0.483 | 10.5 | -1.75 | 1.23 | 1.57 | 1.16 | -- | -0.215 | 3.25 | 35.21 | 9 | -- | -- |
| 111.18 | 0.495 | 10.5 | -1.78 | 1.21 | 1.68 | -- | 0.622 | -0.224 | 3.33 | 34.34 | 11 | -- | -- |
| 111.85 | 0.496 | 10.5 | -1.77 | 1.2 | 1.71 | -- | -- | -0.223 | 3.35 | 34.34 | 11 | -- | -- |
| 143.72 | 0.558 | 10.5 | -1.82 | -- | 2.06 | -- | 0.248 | -0.0977 | -- | 65.43 | 24 | -- | -- |
| 136.46 | 0.548 | 10.5 | -1.75 | 2.03 | -- | 1.5 | -- | -0.245 | 2.94 | -- | -- | -- | -- |
| 144.04 | 0.562 | 10.5 | -1.79 | 2.04 | -- | -- | -- | -0.254 | 2.95 | -- | -- | -- | -- |
| 144.12 | 0.559 | 10.5 | -1.77 | -- | 2.03 | -- | -- | -0.0779 | -- | 66 | 24 | -- | -- |
| 194.12 | 0.649 | 10.5 | -- | 1.14 | 1.67 | -- | -- | -0.0225 | 3.25 | 31.62 | 20 | -- | -- |
| 383.02 | 0.914 | 10.5 | -1.7 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 228.16 | 0.707 | 10.5 | -- | 2 | -- | -- | -- | -0.055 | 2.94 | -- | -- | -- | -- |
| 225.82 | 0.7 | 10.5 | -- | -- | 2 | -- | -- | 0.122 | -- | 66 | 24 | -- | -- |
| 459.22 | 1 | 10.5 | -- | -- | -- | -- | -- | -0.0128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.75 | humidity | 70 | 30 | > th | dose dependent | sin | 0 | NA |
| 17 | 98.50 | humidity | 60 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 18 | 98.51 | humidity | 90 | 30 | < th | dose dependent | sin | 2 | NA |
| 57 | 101.10 | humidity | 80 | 30 | > th | dose independent | rect. | 3 | 17 |
| 59 | 101.15 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 74 | 101.56 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 11 |
| 87 | 102.15 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 94 | 102.23 | humidity | 80 | 10 | > th | dose independent | sin | 0 | NA |
| 115 | 102.56 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 11 |
| 126 | 102.93 | humidity | 80 | 10 | < th | dose independent | sin | 1 | NA |
| 150 | 103.34 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 170 | 103.55 | humidity | 80 | 30 | < th | dose independent | rect. | 4 | 14 |
| 228 | 104.11 | humidity | 80 | 30 | < th | dose independent | rect. | 2 | 16 |
| 268 | 104.48 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 335 | 105.11 | humidity | 80 | 30 | > th | dose independent | rect. | 3 | 13 |
| 359 | 105.28 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 20 |
| 453 | 106.19 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 507 | 106.54 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 589 | 107.18 | radiation | 10 | 90 | < th | dose dependent | sin | 0 | NA |
| 671 | 107.62 | humidity | 50 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 738 | 107.99 | radiation | 20 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 744 | 108.02 | humidity | 50 | 10 | > th | dose dependent | no | NA | NA |
| 746 | 108.04 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 778 | 108.18 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 871 | 108.70 | humidity | 60 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 874 | 108.71 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 887 | 108.74 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 893 | 108.76 | humidity | 50 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 947 | 108.91 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 23 |