Os05g0569300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to G-box binding factor 1.
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Os05g0569300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to G-box binding factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.98 | 0.345 | 9.07 | 0.613 | 1.13 | 1.15 | -1.35 | 0.229 | 0.278 | 5.69 | 17.03 | 2816 | -- | -- |
| 54.04 | 0.342 | 9.08 | 0.577 | 1.13 | 1.14 | -1.36 | -- | 0.267 | 5.74 | 17.5 | 2765 | -- | -- |
| 58.25 | 0.355 | 9.08 | 0.537 | 1.12 | 1.15 | -- | -0.0402 | 0.261 | 5.91 | 17.19 | 2728 | -- | -- |
| 58.25 | 0.355 | 9.08 | 0.547 | 1.12 | 1.17 | -- | -- | 0.261 | 5.92 | 17.1 | 2729 | -- | -- |
| 122.93 | 0.516 | 9.11 | 0.465 | -- | 1.27 | -- | -0.181 | 0.254 | -- | 16.75 | 2748 | -- | -- |
| 86.08 | 0.435 | 9.03 | 1.04 | 1.19 | -- | -1.35 | -- | 0.515 | 5.47 | -- | -- | -- | -- |
| 90.51 | 0.446 | 9.02 | 1.03 | 1.19 | -- | -- | -- | 0.522 | 5.58 | -- | -- | -- | -- |
| 122.78 | 0.516 | 9.1 | 0.517 | -- | 1.33 | -- | -- | 0.262 | -- | 16.29 | 2748 | -- | -- |
| 64.41 | 0.374 | 9.11 | -- | 1.12 | 1.47 | -- | -- | 0.171 | 5.79 | 13.92 | 2886 | -- | -- |
| 163.52 | 0.598 | 9.04 | 1.07 | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
| 118.68 | 0.51 | 9.05 | -- | 1.2 | -- | -- | -- | 0.406 | 5.54 | -- | -- | -- | -- |
| 128.36 | 0.528 | 9.13 | -- | -- | 1.6 | -- | -- | 0.167 | -- | 14.03 | 2750 | -- | -- |
| 193.85 | 0.65 | 9.07 | -- | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 6 | 54.38 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 7 | 54.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 8 | 54.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 12 |
| 13 | 54.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 20 | 54.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 23 | 54.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 31 | 54.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 33 | 54.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 56 | 55.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 10 |
| 99 | 55.63 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 10 |
| 116 | 55.75 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 19 |
| 123 | 55.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 143 | 55.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 215 | 55.92 | temperature | 20 | 4320 | > th | dose dependent | sin | 4 | NA |
| 217 | 55.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 5 |
| 249 | 55.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 263 | 55.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 269 | 55.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 281 | 55.98 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 292 | 55.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 294 | 55.99 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 405 | 56.05 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 724 | 56.21 | temperature | 20 | 4320 | > th | dose dependent | sin | 20 | NA |
| 866 | 56.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 16 |
| 919 | 56.28 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 950 | 56.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |