BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0569300 Os05g0569300|AK065440
         (380 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0569300  Similar to G-box binding factor 1                   653   0.0  
Os01g0658900  OSBZ8                                               325   3e-89
Os03g0239400  Similar to Transcription factor HBP-1a(C14)          68   1e-11

>Os05g0569300 Similar to G-box binding factor 1
          Length = 380

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/380 (86%), Positives = 329/380 (86%)

Query: 1   MAHDEAVATQKIGKTTSPPKDQPTPCPFPDWSAVQAYYGPGVLPPTYFAPAIASGHAPPP 60
           MAHDEAVATQKIGKTTSPPKDQPTPCPFPDWSAVQAYYGPGVLPPTYFAPAIASGHAPPP
Sbjct: 1   MAHDEAVATQKIGKTTSPPKDQPTPCPFPDWSAVQAYYGPGVLPPTYFAPAIASGHAPPP 60

Query: 61  YMWGPQPIMPPPFGTPYAAMYPHGGAYPHPLMPMMANPLSMEPAKSASSKEKGSNKKLKE 120
           YMWGPQPIMPPPFGTPYAAMYPHGGAYPHPLMPMMANPLSMEPAKSASSKEKGSNKKLKE
Sbjct: 61  YMWGPQPIMPPPFGTPYAAMYPHGGAYPHPLMPMMANPLSMEPAKSASSKEKGSNKKLKE 120

Query: 121 VDGAAVSTGSGDSKKTMTSSGDYSAEGSSDVNDLKVGKTGRKRRLDDGAGAETSAAAKME 180
           VDGAAVSTGSGDSKKTMTSSGDYSAEGSSDVNDLKVGKTGRKRRLDDGAGAETSAAAKME
Sbjct: 121 VDGAAVSTGSGDSKKTMTSSGDYSAEGSSDVNDLKVGKTGRKRRLDDGAGAETSAAAKME 180

Query: 181 NALPPSHILGSTAILPNHSFPAQVIRPSATNVANSRALXXXXXXXXXXXXXXHTGVSTXX 240
           NALPPSHILGSTAILPNHSFPAQVIRPSATNVANSRAL              HTGVST  
Sbjct: 181 NALPPSHILGSTAILPNHSFPAQVIRPSATNVANSRALGTPISPPPGVIVPSHTGVSTEL 240

Query: 241 XXXXXXXXXXXXXXQSNRESARRSRLRKQAETEDLATQVESLTAENTXXXXXXXXXXXXX 300
                         QSNRESARRSRLRKQAETEDLATQVESLTAENT             
Sbjct: 241 LIKDERELKREKRKQSNRESARRSRLRKQAETEDLATQVESLTAENTSLRSEISRLSESS 300

Query: 301 XXXXXXXXALMGKLKDPAASTQAETSLQKTTTASSPRVVENFLSMIDNTNKTSVRHTEHA 360
                   ALMGKLKDPAASTQAETSLQKTTTASSPRVVENFLSMIDNTNKTSVRHTEHA
Sbjct: 301 EKLRLENSALMGKLKDPAASTQAETSLQKTTTASSPRVVENFLSMIDNTNKTSVRHTEHA 360

Query: 361 EPKLRQLLGSGPATDVVAAS 380
           EPKLRQLLGSGPATDVVAAS
Sbjct: 361 EPKLRQLLGSGPATDVVAAS 380



>Os01g0658900 OSBZ8
          Length = 360

 Score =  325 bits (834), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/384 (49%), Positives = 227/384 (59%), Gaps = 30/384 (7%)

Query: 1   MAHDEAVATQKIGKTTSPPKDQPTPCPFPDWSAVQAYYGPGVLPPTYFAPAIASGHAPPP 60
           M +DEAV TQK+GK  SPPKD P   P+ DWS +QAYYGPG+LPPT+F+P IA+GH PPP
Sbjct: 1   MGNDEAVVTQKMGKAPSPPKDHPALSPYLDWSNMQAYYGPGILPPTFFSPGIAAGHTPPP 60

Query: 61  YMWGPQPIMPPPFGTPYAAMYPHGGAYPHPLMPMMANPLSMEPAKSASSKEKGSNKKLKE 120
           ++ GPQP++P  FG PYAA+YP GGA+ HP MP+M +PLSMEPAKS +SK+  SNKK+KE
Sbjct: 61  FILGPQPLVPSAFGKPYAAIYPPGGAFSHPFMPLMVSPLSMEPAKSVNSKDSCSNKKMKE 120

Query: 121 VDGAAVSTGSGDSKKTMTSSGDYSAEGSSDVNDLKVGKTGRKRRLDD--GAGAETSAAAK 178
           +DGAAVSTGSG+S+KT   SGD S EGSSD N+ K   T +KR +DD   +G ET     
Sbjct: 121 IDGAAVSTGSGNSEKT---SGDCSLEGSSDGNNQKASGTPKKRSIDDRPKSGVETGG--- 174

Query: 179 MENALPPSHILGSTAILPNHSFPAQVIRPSATNVANSRALXXXXXXXXXXXXXXHTGVST 238
              AL P+      A LPN   P   I+P  +  ++ R +                   T
Sbjct: 175 ---ALTPNDRPSEQAALPNLCIPVTAIKPDVSTASDFRVIATPV---------------T 216

Query: 239 XXXXXXXXXXXXXXXXQSNRESARRSRLRKQAETEDLATQVESLTAENTXXXXXXXXXXX 298
                           QSNRESARRSRLRKQAETE+LA +VE LTAENT           
Sbjct: 217 EVPTKDDKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTE 276

Query: 299 XXXXXXXXXXALMGKLKDPAASTQAETSLQKTTTASSPRVVENFLSMIDNTNK-TSVRHT 357
                     ALM KL +       E    K T A   R VENFLSMID T    S  H 
Sbjct: 277 SSKKLRLENSALMEKLTETGPDEAQEVPPVK-TKAQQARGVENFLSMIDKTGTPRSSGHM 335

Query: 358 EH--AEPKLRQLLGSGPATDVVAA 379
           +H  A PKLRQLLGSG ATD VAA
Sbjct: 336 DHAIATPKLRQLLGSGLATDAVAA 359



>Os03g0239400 Similar to Transcription factor HBP-1a(C14)
          Length = 383

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 56/107 (52%), Gaps = 19/107 (17%)

Query: 1   MAHDEAVATQKIGKTTSPPKDQPTPC----PFPDWSAVQAYYGPG----VLPPTYFAPAI 52
           M   E     K  K+++   +Q TP      +PDWS  QAYY P     + PP +F P +
Sbjct: 1   MGKGEVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNPAGTAPMTPPGFFHPNV 60

Query: 53  A---SGHAPPPYMWGPQPIMPPPFGT--PYAAMYPHGGAYPH-PLMP 93
           A    GH   PYMWGPQ  M PP+GT  PYAAMY  G  Y   P++P
Sbjct: 61  APSPQGH---PYMWGPQ--MMPPYGTPPPYAAMYAQGTPYQQAPMLP 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.123    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,070,504
Number of extensions: 658399
Number of successful extensions: 3573
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3559
Number of HSP's successfully gapped: 5
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)