Os03g0239400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor HBP-1a(C14).
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Os03g0239400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor HBP-1a(C14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.27 | 0.171 | 9.96 | 0.336 | 0.27 | 0.516 | -0.344 | -0.639 | 0.335 | 6.93 | 28.9 | 9 | -- | -- |
| 13.9 | 0.175 | 9.98 | 0.221 | 0.271 | 0.501 | -0.36 | -- | 0.301 | 6.68 | 28.69 | 11 | -- | -- |
| 13.57 | 0.172 | 9.96 | 0.333 | 0.274 | 0.498 | -- | -0.668 | 0.332 | 6.7 | 28.9 | 8 | -- | -- |
| 14.22 | 0.176 | 9.98 | 0.217 | 0.27 | 0.502 | -- | -- | 0.306 | 6.73 | 28.61 | 11 | -- | -- |
| 15.57 | 0.184 | 9.96 | 0.446 | -- | 0.764 | -- | -1.22 | 0.359 | -- | 61.82 | 279 | -- | -- |
| 17.6 | 0.197 | 10 | 0.0952 | 0.363 | -- | -0.27 | -- | 0.198 | 5.13 | -- | -- | -- | -- |
| 17.78 | 0.197 | 10 | 0.0952 | 0.361 | -- | -- | -- | 0.199 | 5.07 | -- | -- | -- | -- |
| 16.61 | 0.19 | 9.98 | 0.257 | -- | 0.732 | -- | -- | 0.307 | -- | 75.85 | 259 | -- | -- |
| 15.33 | 0.183 | 9.99 | -- | 0.284 | 0.414 | -- | -- | 0.263 | 6.36 | 28.61 | 11 | -- | -- |
| 24.61 | 0.232 | 10 | 0.108 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 18.02 | 0.199 | 10 | -- | 0.363 | -- | -- | -- | 0.189 | 5.07 | -- | -- | -- | -- |
| 18.24 | 0.199 | 9.99 | -- | -- | 0.646 | -- | -- | 0.269 | -- | 91.16 | 255 | -- | -- |
| 24.92 | 0.233 | 10 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 13.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 4 | 13.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 7 | 13.30 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 13.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 10 | 13.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 11 | 13.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 13.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 15 | 13.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 17 | 13.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 18 | 13.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 24 | 13.43 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 34 | 13.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 37 | 13.49 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 62 | 13.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 65 | 13.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 77 | 13.69 | temperature | 25 | 30 | < th | dose dependent | sin | 4 | NA |
| 79 | 13.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 81 | 13.70 | temperature | 30 | 30 | < th | dose dependent | sin | 6 | NA |
| 84 | 13.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 102 | 13.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 103 | 13.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 112 | 13.76 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 117 | 13.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 156 | 13.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 161 | 13.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 170 | 13.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 184 | 13.86 | temperature | 25 | 270 | < th | dose dependent | sin | 7 | NA |
| 195 | 13.86 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 218 | 13.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 297 | 13.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 310 | 13.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 314 | 13.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 322 | 13.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 365 | 14.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 367 | 14.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 510 | 14.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 551 | 14.14 | temperature | 10 | 30 | > th | dose dependent | sin | 6 | NA |
| 623 | 14.18 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 696 | 14.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 720 | 14.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 784 | 14.24 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 975 | 14.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |