BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0239400 Os03g0239400|AK066563
(383 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35530.1 | chr2:14923280-14926025 REVERSE LENGTH=410 178 5e-45
AT1G32150.1 | chr1:11566022-11568317 FORWARD LENGTH=390 141 7e-34
AT4G36730.1 | chr4:17309850-17311752 REVERSE LENGTH=316 97 1e-20
AT2G46270.1 | chr2:19000859-19002901 FORWARD LENGTH=383 86 3e-17
AT4G01120.1 | chr4:481929-483970 REVERSE LENGTH=361 75 7e-14
AT5G15830.1 | chr5:5168591-5169151 FORWARD LENGTH=187 49 4e-06
AT2G04038.1 | chr2:1331919-1332419 FORWARD LENGTH=167 49 4e-06
AT5G38800.1 | chr5:15538305-15538802 REVERSE LENGTH=166 49 5e-06
AT3G49760.1 | chr3:18455569-18456039 REVERSE LENGTH=157 48 8e-06
AT3G62420.1 | chr3:23091844-23092284 REVERSE LENGTH=147 48 9e-06
AT1G75390.1 | chr1:28292224-28292745 FORWARD LENGTH=174 48 9e-06
>AT2G35530.1 | chr2:14923280-14926025 REVERSE LENGTH=410
Length = 409
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 168/345 (48%), Gaps = 29/345 (8%)
Query: 31 AYPDWSQFQAYYNPAGTAPMTPPGFFHPNVAPSPQGHPYMWGXXXXXXXXXXXXXXXXXX 90
A PDWS FQAY +PM PP H VA SPQ HPYMWG
Sbjct: 40 ATPDWSGFQAY------SPMPPP---HGYVASSPQPHPYMWGVQHMMPPYGTPPHPYVAM 90
Query: 91 Q--GTPYQQAPMLPGSHPYNPYPGQSPNGTVQTP-TSAGGTETD-KSGKSKRKTPLKRSK 146
G Y M PGS+PY+PY SPNG + + GGT+ D K + K K P+KRS+
Sbjct: 91 YPPGGMYAHPSMPPGSYPYSPYAMPSPNGMTEVSGNTTGGTDGDAKQSEVKEKLPIKRSR 150
Query: 147 GSLGNLDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTKDGSEHG 206
GSLG+L+++ ++ G
Sbjct: 151 GSLGSLNMITGKNNEPGKNSGASANGAYSKSGESASDGSSEGSDGNSQ--------NDSG 202
Query: 207 QGNDASNKGATAQS--SAVEPVQASTGPVVL---NXXXXXXXXXXXXXXXATGVNMGMDY 261
G D + A +++ SA P S G +L T +N+GMDY
Sbjct: 203 SGLDGKDAEAASENGGSANGPQNGSAGTPILPVSQTVPIMPMTAAGVPGPPTNLNIGMDY 262
Query: 262 WGTPTS--VP-MHNKVIXXXXXXXXXXXRDVVLSDPAIQDERELKRQKRKQSNRESARRS 318
WG PTS +P MH KV RD S P +QD+RELKRQ+RKQSNRESARRS
Sbjct: 263 WGAPTSAGIPGMHGKVSTPVPGVVAPGSRDGGHSQPWLQDDRELKRQRRKQSNRESARRS 322
Query: 319 RLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSENTT 363
RLRKQAE +E+A RA++L +EN++L+ E+ +L+ +C LT+ENT+
Sbjct: 323 RLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELTTENTS 367
>AT1G32150.1 | chr1:11566022-11568317 FORWARD LENGTH=390
Length = 389
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 153/351 (43%), Gaps = 62/351 (17%)
Query: 34 DWSQFQAYYNPAGTAPMTPPGFFHPNVAPSPQGHPYMWGXXXXXXXXXXXXXXXXXXQ-- 91
DWS FQAY +PM P G+ VA SPQ HPYMWG
Sbjct: 48 DWSGFQAY------SPMPPHGY----VASSPQPHPYMWGVQHMMPPYGTPPHPYVTMYPP 97
Query: 92 GTPYQQAPMLPGSHPYNPYPGQSPNGTVQTPTSAGGT-ETD-KSGKSKRKTPLKRSKGSL 149
G Y + PGS+PY+PY SPNG + + G E D K K K P+KRSKGSL
Sbjct: 98 GGMYAHPSLPPGSYPYSPYAMPSPNGMAEASGNTGSVIEGDGKPSDGKEKLPIKRSKGSL 157
Query: 150 GNLDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTKDGSEHG--Q 207
G+L+++ + GS H
Sbjct: 158 GSLNMIIGKNNEAGKNSGASANGACSKSAESGSDGSSDGSDANS----QNDSGSRHNGKD 213
Query: 208 GNDASNKGATA-------------QSSAVEPVQASTGPVVLNXXXXXXXXXXXXXXXATG 254
G AS G +A Q+ A+ PV A+ P T
Sbjct: 214 GETASESGGSAHGPPRNGSNLPVNQTVAIMPVSATGVP-----------------GPPTN 256
Query: 255 VNMGMDYWGTPTSVPMHNKVIXXXXXXXXXXXRDVVLSDPAIQ--DERELKRQKRKQSNR 312
+N+GMDYW H V D S P +Q DERE+KRQ+RKQSNR
Sbjct: 257 LNIGMDYWSG------HGNV----SGAVPGVVVDGSQSQPWLQVSDEREIKRQRRKQSNR 306
Query: 313 ESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSENTT 363
ESARRSRLRKQAE +E+A RA++L ENSSL+ E+ +L+ + L +EN++
Sbjct: 307 ESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAENSS 357
>AT4G36730.1 | chr4:17309850-17311752 REVERSE LENGTH=316
Length = 315
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 26/111 (23%)
Query: 253 TGVNMGMDYWGTPTSVPMHNKVIXXXXXXXXXXXRDVVLSDPAIQDERELKRQKRKQSNR 312
T +N+GMD W + VP ++DERELKRQKRKQSNR
Sbjct: 200 TNLNIGMDLWSSQAGVP--------------------------VKDERELKRQKRKQSNR 233
Query: 313 ESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSENTT 363
ESARRSRLRKQAE E++ R + L EN SL++EL++L +C+ L SEN +
Sbjct: 234 ESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNS 284
>AT2G46270.1 | chr2:19000859-19002901 FORWARD LENGTH=383
Length = 382
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 296 IQDERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCN 355
+Q+ERELKR++RKQSNRESARRSRLRKQAE EE+A + + L EN +L+ EL QL EK +
Sbjct: 254 LQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSD 313
Query: 356 SLTSENTT 363
L N T
Sbjct: 314 KLRGANAT 321
>AT4G01120.1 | chr4:481929-483970 REVERSE LENGTH=361
Length = 360
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 298 DERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSL 357
+E+E+KR+KRKQSNRESARRSRLRKQAE E+++ + D L EN SL+ +L QL + L
Sbjct: 246 NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKL 305
Query: 358 TSEN 361
EN
Sbjct: 306 RLEN 309
>AT5G15830.1 | chr5:5168591-5169151 FORWARD LENGTH=187
Length = 186
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 303 KRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSENT 362
++Q+R SNRESARRSR+RKQ +E+ ++ L+ EN L ++L Q+ + + + EN+
Sbjct: 74 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSDNNDLVIQENS 133
Query: 363 T 363
+
Sbjct: 134 S 134
>AT2G04038.1 | chr2:1331919-1332419 FORWARD LENGTH=167
Length = 166
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 295 AIQDERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKC 354
+ DER +Q+R SNRESARRSR+RKQ +E+ ++ L+ EN+ L ++L ++ E
Sbjct: 69 MVLDER---KQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQ 125
Query: 355 NSLTSENT 362
N + EN+
Sbjct: 126 NCVLKENS 133
>AT5G38800.1 | chr5:15538305-15538802 REVERSE LENGTH=166
Length = 165
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 292 SDPAIQDEREL---KRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELK 348
SD A ++ +E+ ++QKRK SNRESARRSR+RKQ + +E+ ++ L+ EN L +L
Sbjct: 58 SDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLN 117
Query: 349 QLQEKCNSLTSENT 362
+ E + EN
Sbjct: 118 CVLESQEKVIEENV 131
>AT3G49760.1 | chr3:18455569-18456039 REVERSE LENGTH=157
Length = 156
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 298 DERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSL 357
DER ++KRK SNRESA+RSR +KQ EE++ + + LK +N LK +L+ + C
Sbjct: 70 DER---KKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKIQNQELKNQLRYVLYHCQRT 126
Query: 358 TSEN 361
EN
Sbjct: 127 KMEN 130
>AT3G62420.1 | chr3:23091844-23092284 REVERSE LENGTH=147
Length = 146
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 296 IQDERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCN 355
+ DER ++KR SNRESARRSR+RKQ + ++ N LLK +N+ + E++ + +K
Sbjct: 21 VTDER---KRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYI 77
Query: 356 SLTSENTT 363
+ S+N
Sbjct: 78 EMESKNNV 85
>AT1G75390.1 | chr1:28292224-28292745 FORWARD LENGTH=174
Length = 173
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 292 SDPAIQDERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSL 343
SD +D + +++KRKQSNRESARRSR+RKQ +++ + L++EN+ +
Sbjct: 30 SDLRQRDLIDERKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQI 81
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.305 0.123 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,916,591
Number of extensions: 259055
Number of successful extensions: 1475
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1483
Number of HSP's successfully gapped: 20
Length of query: 383
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 283
Effective length of database: 8,364,969
Effective search space: 2367286227
Effective search space used: 2367286227
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 112 (47.8 bits)