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Os12g0233800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA-binding factor of bZIP class.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0138) R2 : 0.0073
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0534 (0.0291) R2dN8 : 0.00943 R2N8 : 0.0073
σ : 0.261
deviance : 31.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.45 0.191 10.7 0.22 0.425 -0.505 -0.161 1.36 0.0124 3.2 25.2 892 -- --
17.14 0.193 10.7 0.00424 0.458 -0.395 0.00159 -- -0.00169 3.48 23.64 911 -- --
16.52 0.189 10.7 0.212 0.427 -0.495 -- 1.32 0.00986 3.32 25.3 900 -- --
16.98 0.192 10.8 -0.035 0.443 -0.36 -- -- -0.0505 3.51 24.9 929 -- --
21.16 0.214 10.7 0.154 -- -0.657 -- 0.865 0.0634 -- 22.7 208 -- --
20.2 0.211 10.8 -0.125 0.446 -- -0.0197 -- -0.0771 4.39 -- -- -- --
20.2 0.21 10.8 -0.125 0.446 -- -- -- -0.077 4.4 -- -- -- --
21.6 0.216 10.7 0.0047 -- -0.587 -- -- 0.0159 -- 22.7 206 -- --
17 0.192 10.8 -- 0.443 -0.37 -- -- -0.0405 3.51 24.9 929 -- --
30.86 0.26 10.8 -0.107 -- -- -- -- -0.0652 -- -- -- -- --
20.61 0.212 10.8 -- 0.443 -- -- -- -0.0631 4.41 -- -- -- --
21.6 0.216 10.7 -- -- -0.586 -- -- 0.0156 -- 22.7 206 -- --
31.16 0.261 10.8 -- -- -- -- -- -0.0534 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.17 temperature 25 720 < th dose independent rect. 8 16
11 16.45 temperature 25 720 > th dose independent rect. 8 13
12 16.46 temperature 25 720 > th dose dependent rect. 16 18
13 16.47 temperature 25 720 > th dose dependent rect. 16 20
18 16.50 temperature 25 720 > th dose dependent rect. 16 3
21 16.52 temperature 15 30 > th dose dependent rect. 9 14
25 16.53 temperature 10 720 > th dose dependent rect. 7 14
26 16.53 radiation 1 720 < th dose dependent rect. 5 19
29 16.55 temperature 10 720 > th dose dependent rect. 7 12
30 16.55 temperature 30 720 < th dose dependent rect. 9 13
33 16.56 temperature 25 720 > th dose dependent rect. 16 7
39 16.58 temperature 30 720 < th dose independent rect. 18 15
47 16.60 temperature 25 720 < th dose independent sin 20 NA
55 16.62 humidity 70 720 > th dose independent rect. 18 13
57 16.62 radiation 1 720 < th dose independent rect. 5 19
59 16.62 temperature 10 720 > th dose dependent rect. 9 10
67 16.63 radiation 1 720 < th dose independent rect. 7 17
75 16.65 radiation 1 720 > th dose independent rect. 7 22
79 16.66 radiation 1 720 > th dose independent rect. 7 12
89 16.66 temperature 25 720 > th dose dependent sin 17 NA
90 16.67 radiation 1 720 < th dose independent rect. 14 10
95 16.67 radiation 1 720 < th dose dependent rect. 7 17
111 16.70 radiation 1 720 < th dose dependent rect. 14 10
113 16.70 temperature 25 720 > th dose dependent rect. 9 14
129 16.73 temperature 25 720 > th dose independent rect. 16 3
130 16.73 humidity 70 720 > th dose independent rect. 19 3
162 16.76 radiation 1 720 < th dose independent rect. 10 14
171 16.76 temperature 10 270 > th dose dependent rect. 7 20
175 16.77 humidity 70 720 > th dose independent rect. 14 17
190 16.78 radiation 1 720 > th dose independent rect. 16 14
193 16.78 temperature 30 720 < th dose dependent sin 21 NA
206 16.79 humidity 60 720 > th dose dependent rect. 19 3
211 16.79 radiation 1 720 < th dose dependent rect. 10 14
215 16.80 temperature 25 720 > th dose independent sin 21 NA
216 16.80 radiation 1 720 > th dose independent rect. 16 3
273 16.83 humidity 70 720 > th dose independent rect. 18 6
274 16.83 humidity 70 720 > th dose independent rect. 14 10
338 16.87 temperature 25 720 > th dose dependent rect. 11 23
364 16.89 wind 1 43200 < th dose dependent rect. 1 1
378 16.90 humidity 70 720 > th dose independent rect. 19 1
399 16.91 radiation 10 43200 > th dose independent rect. 9 1
426 16.92 radiation 1 720 > th dose independent rect. 9 10
449 16.92 temperature 25 720 > th dose dependent no NA NA
472 16.94 humidity 50 720 > th dose dependent rect. 17 6
478 16.95 radiation 1 720 > th dose independent sin 15 NA
507 16.96 temperature 10 720 > th dose dependent rect. 7 18
517 16.97 humidity 80 43200 < th dose dependent rect. 22 1
528 16.97 temperature 25 720 > th dose dependent rect. 22 23
543 16.99 radiation 1 720 < th dose independent sin 14 NA
572 17.00 wind 9 43200 > th dose dependent rect. 13 18
575 17.01 temperature 25 720 < th dose independent rect. 17 3
590 17.01 temperature 10 30 > th dose dependent rect. 9 12
612 17.03 humidity 70 720 > th dose independent sin 12 NA
630 17.03 wind 3 43200 > th dose dependent rect. 2 16
635 17.03 temperature 30 270 < th dose dependent rect. 11 20
638 17.04 humidity 80 43200 > th dose independent rect. 22 1
646 17.04 radiation 1 720 > th dose independent rect. 16 20
672 17.05 radiation 1 43200 < th dose dependent rect. 23 1
708 17.06 temperature 20 30 > th dose dependent rect. 9 21
731 17.07 wind 7 43200 > th dose dependent rect. 3 18
735 17.08 humidity 70 720 > th dose independent sin 15 NA
741 17.08 wind 7 43200 > th dose independent rect. 3 15
743 17.08 wind 7 43200 > th dose independent rect. 3 18
747 17.08 temperature 10 720 > th dose dependent sin 21 NA
748 17.08 temperature 30 720 < th dose dependent rect. 19 1
752 17.08 wind 7 43200 > th dose dependent rect. 9 12
768 17.08 wind 7 43200 > th dose dependent rect. 24 21
771 17.09 humidity 80 43200 < th dose independent rect. 22 2
782 17.09 wind 7 43200 < th dose independent rect. 3 18
788 17.09 temperature 25 270 < th dose independent rect. 10 21
789 17.09 wind 7 43200 > th dose dependent sin 22 NA
794 17.09 temperature 10 720 > th dose dependent rect. 11 8
813 17.10 temperature 30 1440 > th dose independent rect. 10 4
814 17.10 wind 7 43200 > th dose independent rect. 6 12
818 17.10 wind 7 43200 > th dose independent rect. 6 15
833 17.10 radiation 1 720 < th dose dependent sin 19 NA
837 17.10 wind 5 43200 > th dose dependent rect. 12 4
841 17.10 wind 5 43200 > th dose dependent rect. 9 8
867 17.10 temperature 10 90 > th dose dependent rect. 9 20
869 17.11 wind 7 43200 > th dose independent sin 0 NA
871 17.11 temperature 25 720 < th dose independent rect. 19 1
881 17.11 wind 7 43200 < th dose independent rect. 3 15
893 17.11 wind 9 43200 > th dose independent rect. 13 19
940 17.12 wind 7 43200 < th dose independent rect. 4 13
950 17.12 wind 7 43200 < th dose independent rect. 6 15
962 17.12 temperature 30 1440 > th dose independent rect. 18 20
965 17.12 wind 3 43200 > th dose dependent sin 1 NA
1000 17.13 wind 7 43200 < th dose independent sin 23 NA