BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0233800 Os12g0233800|AK065767
(390 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0233800 Similar to DNA-binding factor of bZIP class 612 e-175
Os02g0128200 Similar to Transcription factor HBP-1a (Histon... 231 7e-61
Os03g0239400 Similar to Transcription factor HBP-1a(C14) 182 3e-46
Os07g0209800 Similar to HALF-1 99 4e-21
Os05g0569300 Similar to G-box binding factor 1 91 2e-18
Os01g0658900 OSBZ8 83 3e-16
>Os12g0233800 Similar to DNA-binding factor of bZIP class
Length = 390
Score = 612 bits (1577), Expect = e-175, Method: Compositional matrix adjust.
Identities = 314/390 (80%), Positives = 314/390 (80%)
Query: 1 MGSSGADAPTKTSKASAPQEQQPPASSSTATPAVYPDWANFQGYXXXXXXXXXXXXVASS 60
MGSSGADAPTKTSKASAPQEQQPPASSSTATPAVYPDWANFQGY VASS
Sbjct: 1 MGSSGADAPTKTSKASAPQEQQPPASSSTATPAVYPDWANFQGYPPIPPHGFFPSPVASS 60
Query: 61 PQGHPYMWGAQXXXXXXXXXXXXXXXXXXXXXAHPSMPPGAHPFTPYAMASPNGNADPXX 120
PQGHPYMWGAQ AHPSMPPGAHPFTPYAMASPNGNADP
Sbjct: 61 PQGHPYMWGAQPMIPPYGTPPPPYVMYPPGVYAHPSMPPGAHPFTPYAMASPNGNADPTG 120
Query: 121 XXXXXXXXXXXXXDGKSSEGKEKSPIKRSKGSLGSLNMITGKNSTEHGKTSGASANGAIS 180
DGKSSEGKEKSPIKRSKGSLGSLNMITGKNSTEHGKTSGASANGAIS
Sbjct: 121 TTTTAAAAAAGETDGKSSEGKEKSPIKRSKGSLGSLNMITGKNSTEHGKTSGASANGAIS 180
Query: 181 QXXXXXXXXXXXXXXANSQNDSHHKESGQEQDGEVRSSQNGVSRSPSQAKLNQTMAIMPM 240
Q ANSQNDSHHKESGQEQDGEVRSSQNGVSRSPSQAKLNQTMAIMPM
Sbjct: 181 QSGESGSESSSEGSEANSQNDSHHKESGQEQDGEVRSSQNGVSRSPSQAKLNQTMAIMPM 240
Query: 241 TSSGPVPAPTTNLNIGMDYWANTASSTPAIHGKATPTAAPGSMVPGEQWVQDERELKRQR 300
TSSGPVPAPTTNLNIGMDYWANTASSTPAIHGKATPTAAPGSMVPGEQWVQDERELKRQR
Sbjct: 241 TSSGPVPAPTTNLNIGMDYWANTASSTPAIHGKATPTAAPGSMVPGEQWVQDERELKRQR 300
Query: 301 RKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDXXXXXXXXXXX 360
RKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYD
Sbjct: 301 RKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDELLSKNSSLKE 360
Query: 361 XXXDKQHKTDEAGVDNKLQHSGDDSQKKGN 390
DKQHKTDEAGVDNKLQHSGDDSQKKGN
Sbjct: 361 KLEDKQHKTDEAGVDNKLQHSGDDSQKKGN 390
>Os02g0128200 Similar to Transcription factor HBP-1a (Histone-specific
transcription factor HBP1)
Length = 347
Score = 231 bits (589), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 158/353 (44%), Positives = 193/353 (54%), Gaps = 57/353 (16%)
Query: 1 MGSSGADAPTKTSKASAPQEQQPPASSSTATPAVYPDWANFQGYXXXXXXXXXXXXVASS 60
MG++ P+K +KAS P+ Q PA++S T VYP+W FQ Y VA+S
Sbjct: 1 MGTNDPGTPSKATKASEPE--QSPATTSGTTAPVYPEWPGFQAYSAIPPHGFFPPPVAAS 58
Query: 61 PQGHPYMWGAQXXXXXXXXXXXXXXXXXXXXXAHPSMPPGAHPFTPYAMASPNGNADPXX 120
PQ HPYMWGAQ AHPS P G HPF Y M + NGN +
Sbjct: 59 PQAHPYMWGAQPMVPPYGTPPPYMMYPPGTVYAHPSTP-GVHPFNHYPMLA-NGNVE--- 113
Query: 121 XXXXXXXXXXXXXDGKSSEGKEKSPIKRSKGSLGSLNMITGKNSTEHGKTSGASANGAIS 180
+ G+ + I GKN E G+TSG SANG I+
Sbjct: 114 ----------------------------TAGTAPGASEINGKN--ELGRTSGPSANG-IT 142
Query: 181 QXXXXXXXXXXXXXXANSQNDSHHKESGQEQDGEVRSSQNGVSRSPSQAKLNQTMAIMPM 240
ANSQNDSH KE+ ++DG SSQNG+S + LNQ M++ P
Sbjct: 143 SHSESGSESESEGSDANSQNDSHSKENDVKEDG---SSQNGISHT----ALNQNMSMAP- 194
Query: 241 TSSGPV---PAPTTNLNIGMDYWANTASS-TPAIHGKATPTAAPGSMVPGEQWVQDEREL 296
T +G V APTTNLNIGMDYW SS PA+HGKA+ V GEQW DEREL
Sbjct: 195 TQTGVVIGGVAPTTNLNIGMDYWGAAGSSPVPAMHGKAS-----SGSVRGEQW--DEREL 247
Query: 297 KRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYD 349
K+Q+RKQSNRESARRSRLRKQAECEEL+ RA+ L+ EN+SLR E+ RI+KEY+
Sbjct: 248 KKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYE 300
>Os03g0239400 Similar to Transcription factor HBP-1a(C14)
Length = 383
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 187/369 (50%), Gaps = 34/369 (9%)
Query: 1 MGSSGADAPTKTSKASAPQEQQPPASSSTATPAVYPDWANFQGYXXXXXXXXXXX----- 55
MG +K+ K+SA Q +Q S+ T P YPDW+ FQ Y
Sbjct: 1 MGKGEVATRSKSQKSSATQNEQ---STPTNPPTAYPDWSQFQAYYNPAGTAPMTPPGFFH 57
Query: 56 -XVASSPQGHPYMWGAQXXXXXXXXXXXXXXXXXXXXXAHPSMPPGAHPFTPYAMASPNG 114
VA SPQGHPYMWG Q M PG+HP+ PY SPNG
Sbjct: 58 PNVAPSPQGHPYMWGPQMMPPYGTPPPYAAMYAQGTPYQQAPMLPGSHPYNPYPGQSPNG 117
Query: 115 NADPXXXXXXXXXXXXXXXDGKSSEGKEKSPIKRSKGSLGSLNMITGKNSTEHGKTSGAS 174
KS + K K+P+KRSKGSLG+L+++ KN K S +S
Sbjct: 118 TVQ-------TPTSAGGTETDKSGKSKRKTPLKRSKGSLGNLDVVATKNKKAPAKPSASS 170
Query: 175 ANGAISQXXXXXXXXXXXXXXANSQNDSHHKESGQEQDGEVRSSQNGVSRS----PSQAK 230
+N S NS++ S K+ + G S++ ++S P QA
Sbjct: 171 SN-EGSSHSESGSGSSSEGSSTNSKSGSRTKDGSEHGQGNDASNKGATAQSSAVEPVQAS 229
Query: 231 LNQTMAIMPMTSSGPVP----APTTNLNIGMDYWANTASSTPAIHGK--ATPTAAPGS-- 282
+ + PM PVP P T +N+GMDYW T +S P +H K A P +AP S
Sbjct: 230 TG-PVVLNPMMPYWPVPPPMAGPATGVNMGMDYWG-TPTSVP-MHNKVIAAPASAPSSNS 286
Query: 283 --MVPGEQWVQDERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDE 340
+V + +QDERELKRQ+RKQSNRESARRSRLRKQAE EE+A RA++LKQEN+SL++E
Sbjct: 287 RDVVLSDPAIQDERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEE 346
Query: 341 VNRIRKEYD 349
+ +++++ +
Sbjct: 347 LKQLQEKCN 355
>Os07g0209800 Similar to HALF-1
Length = 205
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 9/114 (7%)
Query: 238 MPMTSSG--PVPAPTTNLNIGMDYWANT-ASSTPAIHGKATPTAAPGSMVPGEQWV--QD 292
+P+++ G +P T NLNIG+D W+ A + PA G+A+P G + V D
Sbjct: 26 LPVSAPGRAALPNATPNLNIGIDLWSTPPALAVPAGQGEASP----GLALARRDGVAHLD 81
Query: 293 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRK 346
ERELKR+RRKQSNRESARRSRLRKQ ECEELA++ L EN++LR E+++++K
Sbjct: 82 ERELKRERRKQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKK 135
>Os05g0569300 Similar to G-box binding factor 1
Length = 380
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 6/71 (8%)
Query: 280 PGSMVPG------EQWVQDERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQE 333
PG +VP E ++DERELKR++RKQSNRESARRSRLRKQAE E+LA + E L E
Sbjct: 226 PGVIVPSHTGVSTELLIKDERELKREKRKQSNRESARRSRLRKQAETEDLATQVESLTAE 285
Query: 334 NTSLRDEVNRI 344
NTSLR E++R+
Sbjct: 286 NTSLRSEISRL 296
>Os01g0658900 OSBZ8
Length = 360
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 277 TAAPGSMVPGEQWVQDERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTS 336
A P + VP +D++E KR+RRKQSNRESARRSRLRKQAE EELA++ E+L ENTS
Sbjct: 211 IATPVTEVP----TKDDKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTS 266
Query: 337 LRDEVNRI 344
LR E++R+
Sbjct: 267 LRREISRL 274
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.303 0.119 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,834,217
Number of extensions: 441134
Number of successful extensions: 2156
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2139
Number of HSP's successfully gapped: 6
Length of query: 390
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 287
Effective length of database: 11,657,759
Effective search space: 3345776833
Effective search space used: 3345776833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 157 (65.1 bits)