BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0177300 Os07g0177300|AK073781
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0177300 Protein of unknown function UPF0005 family pro... 460 e-130
Os03g0795800 Protein of unknown function UPF0005 family pro... 355 2e-98
Os03g0745600 Protein of unknown function UPF0005 family pro... 334 3e-92
Os03g0795600 Protein of unknown function UPF0005 family pro... 249 2e-66
Os05g0402300 Protein of unknown function UPF0005 family pro... 240 6e-64
Os07g0177200 Protein of unknown function UPF0005 family pro... 220 6e-58
Os11g0581900 Protein of unknown function UPF0005 family pro... 182 1e-46
>Os07g0177300 Protein of unknown function UPF0005 family protein
Length = 244
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/244 (95%), Positives = 232/244 (95%)
Query: 1 MFRYEKGGDVEAGTSGGARELYPGMTEPPEMRWALIRKIYVILSMQLLLTXXXXXXXXXX 60
MFRYEKGGDVEAGTSGGARELYPGMTEPPEMRWALIRKIYVILSMQLLLT
Sbjct: 1 MFRYEKGGDVEAGTSGGARELYPGMTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKV 60
Query: 61 XXISHFFVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTC 120
ISHFFVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTC
Sbjct: 61 RAISHFFVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTC 120
Query: 121 AFTSGKVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILF 180
AFTSGKVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILF
Sbjct: 121 AFTSGKVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILF 180
Query: 181 PLGRISQMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLF 240
PLGRISQMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLF
Sbjct: 181 PLGRISQMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLF 240
Query: 241 RAAD 244
RAAD
Sbjct: 241 RAAD 244
>Os03g0795800 Protein of unknown function UPF0005 family protein
Length = 241
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 173/241 (71%), Positives = 203/241 (84%), Gaps = 2/241 (0%)
Query: 4 YEKGGDVEAGTSGGARELYPGMTEPPEMRWALIRKIYVILSMQLLLTXXXXXXXXXXXXI 63
+ KG D+EAG G + LYPGM E P++RWALI KIYVILS+QL +T +
Sbjct: 2 FGKGHDLEAG--GSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGV 59
Query: 64 SHFFVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFT 123
S FFVSS+AG LYIFL+ LP IVLCPL YYHQKHPVNL+LLGLFTVAISFAVGMTCA+T
Sbjct: 60 SEFFVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYT 119
Query: 124 SGKVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLG 183
SGKVI E+A LT VVV SLTAYTFWAAKRG DF+FLGPFLF++++VL++F+ IQI FPLG
Sbjct: 120 SGKVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLG 179
Query: 184 RISQMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLFRAA 243
+IS+MIYGG+ASL+FSGYI+YDTDNIIKRYTYD+YVWAAVSLYLDVINLFL+L+ + RAA
Sbjct: 180 KISEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVINLFLALLRVLRAA 239
Query: 244 D 244
D
Sbjct: 240 D 240
>Os03g0745600 Protein of unknown function UPF0005 family protein
Length = 249
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 169/238 (71%), Positives = 200/238 (84%), Gaps = 3/238 (1%)
Query: 7 GGDVEAGTSGGARELYPGMTEPPEMRWALIRKIYVILSMQLLLTXXXXXXXXXXXXISHF 66
GGD EAG AR LYP M E P++RWA +RK+Y ILS+Q+LLT ++ F
Sbjct: 14 GGDAEAGM---ARPLYPMMLESPQLRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALF 70
Query: 67 FVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSGK 126
FVS+ AG LYIFLIILPFIVLCPLYYY+Q+HPVNL+LL LFT AISFAVG+TCAFT G+
Sbjct: 71 FVSTPAGFALYIFLIILPFIVLCPLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGE 130
Query: 127 VILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLGRIS 186
VILESAILT VV SLTAYTFWAA+RG DFSFLGPFLFA++++L+VFA IQ+ FPLGR+S
Sbjct: 131 VILESAILTAAVVVSLTAYTFWAARRGHDFSFLGPFLFAAVMILMVFALIQVFFPLGRVS 190
Query: 187 QMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLFRAAD 244
MIYGG+A+L+F GYIVYDTDN+IKRY+YD+YVWAAV+LYLDVINLFLSL+TLFRA+D
Sbjct: 191 LMIYGGLAALVFCGYIVYDTDNLIKRYSYDEYVWAAVALYLDVINLFLSLLTLFRASD 248
>Os03g0795600 Protein of unknown function UPF0005 family protein
Length = 247
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/239 (52%), Positives = 168/239 (70%), Gaps = 3/239 (1%)
Query: 9 DVEAGTSGGARE--LYPGMTEPPEMRWALIRKIYVILSMQLLLTXXXXXXXXXXXXISHF 66
DVEA GGA +YP M E ++RWA IRK+YVI+S+QLL+T I F
Sbjct: 8 DVEACYPGGAPGGGMYPYMIENAQLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTF 67
Query: 67 F-VSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSG 125
F + L Y+ +II P I++ P+ Y+ KHP+NL L LFTV ISF+VG+ C +G
Sbjct: 68 FQARTPEVLVAYVIIIISPLIMMLPMIYFRNKHPINLFFLLLFTVCISFSVGLGCLSKNG 127
Query: 126 KVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLGRI 185
VI ++A +T +V LT YTFWAAKRG DF FLGPFLFA+ +VL ++A I I P+GR
Sbjct: 128 TVIFQAAGMTAAIVIGLTCYTFWAAKRGYDFEFLGPFLFAATLVLFLYAIITIFLPMGRT 187
Query: 186 SQMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLFRAAD 244
+++YG +A+LIFSG+I+YDTDN+IKRYTYD+YV AA++LYLD+INLF++L+T +AAD
Sbjct: 188 GKLVYGCVAALIFSGFIIYDTDNLIKRYTYDEYVAAAITLYLDIINLFMALVTALQAAD 246
>Os05g0402300 Protein of unknown function UPF0005 family protein
Length = 264
Score = 240 bits (613), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 168/235 (71%), Gaps = 7/235 (2%)
Query: 9 DVEAGTSGGARELYPGMTE-PPEMRWALIRKIYVILSMQLLLTXXXXXXXXXXXXISHFF 67
D+EAGT LYPG++ +RW +RK+Y IL+ QLLLT ++
Sbjct: 31 DLEAGT---GETLYPGISRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATL 87
Query: 68 VSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSGKV 127
SS L + L +LPF+++ PLY+Y KHP N + LGLFT+ +SF++G+ CA T GK+
Sbjct: 88 SSSPT---LALVLAVLPFVLMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKI 144
Query: 128 ILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLGRISQ 187
+LE+ ILT+ VV SLTAYTFWA+K+G++F +LGP LF++L++L+V +FIQ+ FPLG
Sbjct: 145 VLEALILTSAVVASLTAYTFWASKKGKEFGYLGPILFSALVLLVVISFIQVFFPLGSGPV 204
Query: 188 MIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLFRA 242
++GG+ +L+FSG+I+YDT+N+IKR+TYD Y+WA+V LYLD++NLFL ++ + R+
Sbjct: 205 ALFGGLGALVFSGFIIYDTENLIKRHTYDDYIWASVELYLDILNLFLYILNMIRS 259
>Os07g0177200 Protein of unknown function UPF0005 family protein
Length = 247
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 158/222 (71%), Gaps = 2/222 (0%)
Query: 25 MTEPPEMRWALIRKIYVILSMQLLLTXXXXXXXXXXXXISHFFVS-SHAGLGLYIFLIIL 83
M E PE+RWA IRK+Y I++ QL++T I FF++ + A L ++ +I+
Sbjct: 25 MIERPELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFFLARTPASLAAFVLVIVA 84
Query: 84 PFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTC-AFTSGKVILESAILTTVVVFSL 142
P IV+ P + +KHP+NLILL LFT+ +S A+G+ C + +G I+E+A LT +VF L
Sbjct: 85 PLIVMLPTMFLRKKHPINLILLALFTICMSCAIGLGCLSSKAGIAIIEAASLTFGLVFGL 144
Query: 143 TAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLGRISQMIYGGIASLIFSGYI 202
T YTFWAAKRG DFSFL PFL A+ +VL+++ IQ+L P G+++ +YG +A+L+FSG+I
Sbjct: 145 TLYTFWAAKRGHDFSFLRPFLVAAFLVLVLYGLIQMLVPTGKVATTVYGCVAALVFSGFI 204
Query: 203 VYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMTLFRAAD 244
+YDTDN+IKR+ YD+YV AA+SLYLD +N+F+++ T A+D
Sbjct: 205 IYDTDNLIKRHAYDEYVTAAISLYLDTVNIFIAIFTALDASD 246
>Os11g0581900 Protein of unknown function UPF0005 family protein
Length = 258
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 154/234 (65%), Gaps = 2/234 (0%)
Query: 7 GGDVEA-GTSGGARELYPGMTEPPEMRWALIRKIYVILSMQLLLTXXXXXXXXXXXXISH 65
G+ E AR E P +RWA +RK+Y IL++Q +T I
Sbjct: 22 AGEKEVVAEKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPR 81
Query: 66 FFVS-SHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTS 124
FF + S A +Y+ +++ PFIVL P+ Y +KHPVNL+LLGLFT+ S + + +
Sbjct: 82 FFAAGSLASWLVYLAILLCPFIVLWPMLKYREKHPVNLLLLGLFTLCESLTIAVCSSTFL 141
Query: 125 GKVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLGR 184
GKV+L++AILT V V LT +TFWAA RG DF+F+ PFL ASL+VLL + IQI FPLGR
Sbjct: 142 GKVVLQAAILTAVAVIGLTIFTFWAAHRGHDFTFMYPFLAASLLVLLAYLIIQICFPLGR 201
Query: 185 ISQMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVINLFLSLMT 238
IYG +A+++FS +IV+DT+ +IKR+TY++YV AA+SLYLDVINLF++ ++
Sbjct: 202 AGMTIYGCLATVLFSAFIVFDTNQLIKRHTYNEYVIAAISLYLDVINLFMAQLS 255
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.147 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,178,676
Number of extensions: 246014
Number of successful extensions: 761
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 7
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 154 (63.9 bits)