Os07g0177300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0005 family protein.
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Os07g0177300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0005 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.49 | 0.255 | 12.9 | 0.708 | 0.49 | -0.48 | -0.0461 | 0.17 | 0.581 | 21.9 | 25.5 | 709 | -- | -- |
| 29.53 | 0.253 | 12.9 | 0.666 | 0.484 | -0.469 | -0.0132 | -- | 0.568 | 21.9 | 25.58 | 705 | -- | -- |
| 29.5 | 0.253 | 12.9 | 0.701 | 0.488 | -0.478 | -- | 0.141 | 0.578 | 21.9 | 25.53 | 708 | -- | -- |
| 29.53 | 0.253 | 12.9 | 0.663 | 0.486 | -0.47 | -- | -- | 0.565 | 21.9 | 25.58 | 708 | -- | -- |
| 37.05 | 0.283 | 12.9 | 0.731 | -- | -0.38 | -- | 0.233 | 0.536 | -- | 25.9 | 1465 | -- | -- |
| 36.72 | 0.284 | 12.9 | 0.526 | 0.27 | -- | 0.0284 | -- | 0.394 | 22.9 | -- | -- | -- | -- |
| 36.73 | 0.284 | 12.9 | 0.525 | 0.27 | -- | -- | -- | 0.394 | 22.9 | -- | -- | -- | -- |
| 37.05 | 0.285 | 12.9 | 0.574 | -- | -0.212 | -- | -- | 0.503 | -- | 24.8 | 4596 | -- | -- |
| 40.35 | 0.296 | 12.9 | -- | 0.419 | -0.322 | -- | -- | 0.444 | 22.1 | 25.6 | 694 | -- | -- |
| 41.25 | 0.3 | 12.9 | 0.531 | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
| 44 | 0.31 | 12.9 | -- | 0.274 | -- | -- | -- | 0.335 | 23 | -- | -- | -- | -- |
| 45.64 | 0.316 | 12.9 | -- | -- | -0.18 | -- | -- | 0.424 | -- | 24.8 | 4596 | -- | -- |
| 48.69 | 0.326 | 12.9 | -- | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 2 | 28.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 3 | 28.98 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 17 |
| 7 | 29.01 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 38 | 29.33 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 14 |
| 63 | 29.46 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 17 |
| 67 | 29.46 | temperature | 20 | 30 | > th | dose dependent | sin | 15 | NA |
| 80 | 29.52 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 102 | 29.55 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 20 |
| 116 | 29.59 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 17 |
| 123 | 29.60 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 131 | 29.61 | temperature | 30 | 30 | < th | dose dependent | sin | 16 | NA |
| 134 | 29.62 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 137 | 29.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 164 | 29.69 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 13 |
| 165 | 29.69 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 15 |
| 186 | 29.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 208 | 29.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 330 | 29.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 339 | 29.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 407 | 30.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 14 |
| 429 | 30.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 475 | 30.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 490 | 30.16 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 535 | 30.20 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 551 | 30.21 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 572 | 30.24 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 23 |
| 574 | 30.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 589 | 30.26 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 14 |
| 618 | 30.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 626 | 30.31 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 23 |
| 688 | 30.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 769 | 30.43 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 23 |
| 784 | 30.44 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 790 | 30.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 795 | 30.45 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 23 |
| 807 | 30.46 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 23 |
| 814 | 30.47 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 837 | 30.48 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 899 | 30.54 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 930 | 30.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 953 | 30.59 | temperature | 25 | 90 | < th | dose independent | sin | 16 | NA |