Os03g0795600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0005 family protein.
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Os03g0795600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0005 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.04 | 0.734 | 5.74 | 0.303 | 1.54 | 1.21 | 0.68 | 0.573 | 0.307 | 7.32 | 19.97 | 4393 | -- | -- |
| 244.55 | 0.728 | 5.72 | 0.411 | 1.55 | 1.14 | 0.728 | -- | 0.34 | 7.29 | 20.1 | 4374 | -- | -- |
| 245.28 | 0.729 | 5.74 | 0.326 | 1.54 | 1.21 | -- | 0.552 | 0.308 | 7.32 | 20 | 4394 | -- | -- |
| 245.65 | 0.73 | 5.71 | 0.408 | 1.55 | 1.11 | -- | -- | 0.337 | 7.3 | 20.1 | 4375 | -- | -- |
| 368 | 0.893 | 5.77 | 0.453 | -- | 1.25 | -- | 0.652 | 0.358 | -- | 20 | 6527 | -- | -- |
| 264.61 | 0.763 | 5.78 | -0.292 | 1.52 | -- | 0.777 | -- | 0.0322 | 7.37 | -- | -- | -- | -- |
| 266.25 | 0.764 | 5.78 | -0.275 | 1.53 | -- | -- | -- | 0.0308 | 7.36 | -- | -- | -- | -- |
| 369.09 | 0.895 | 5.74 | 0.532 | -- | 1.12 | -- | -- | 0.389 | -- | 20.07 | 6484 | -- | -- |
| 248.09 | 0.734 | 5.73 | -- | 1.54 | 0.827 | -- | -- | 0.248 | 7.31 | 20.56 | 4327 | -- | -- |
| 390.04 | 0.923 | 5.82 | -0.25 | -- | -- | -- | -- | 0.0559 | -- | -- | -- | -- | -- |
| 268.25 | 0.766 | 5.78 | -- | 1.52 | -- | -- | -- | 0.0614 | 7.38 | -- | -- | -- | -- |
| 291.12 | 0.795 | 5.76 | -- | -- | 1.35 | -- | -- | 0.362 | -- | 26.2 | 557 | -- | -- |
| 391.69 | 0.924 | 5.81 | -- | -- | -- | -- | -- | 0.0836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 2 | 229.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 11 |
| 11 | 231.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 13 | 231.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 26 | 232.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 31 | 233.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 48 | 234.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 51 | 234.61 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 11 |
| 69 | 235.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 76 | 235.96 | temperature | 20 | 270 | > th | dose dependent | sin | 13 | NA |
| 77 | 235.97 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 115 | 237.06 | wind | 9 | 720 | < th | dose independent | rect. | 7 | 20 |
| 121 | 237.24 | temperature | 25 | 270 | < th | dose independent | sin | 15 | NA |
| 124 | 237.25 | wind | 3 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 132 | 237.34 | temperature | 30 | 270 | < th | dose dependent | sin | 14 | NA |
| 145 | 237.63 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 15 |
| 162 | 237.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 182 | 238.15 | temperature | 25 | 270 | > th | dose independent | sin | 15 | NA |
| 190 | 238.22 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 21 |
| 211 | 238.53 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 19 |
| 221 | 238.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 224 | 238.71 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 12 |
| 394 | 240.16 | temperature | 20 | 90 | > th | dose independent | rect. | 2 | 1 |
| 405 | 240.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 450 | 240.54 | wind | 9 | 720 | < th | dose independent | rect. | 15 | 4 |
| 466 | 240.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 476 | 240.69 | wind | 9 | 720 | < th | dose independent | rect. | 6 | 13 |
| 502 | 240.83 | wind | 9 | 720 | < th | dose independent | rect. | 7 | 11 |
| 527 | 240.92 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 559 | 241.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 633 | 241.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 10 |
| 644 | 241.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 11 |
| 709 | 241.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 713 | 241.74 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 775 | 241.97 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 1 |
| 804 | 242.04 | wind | 9 | 720 | < th | dose independent | rect. | 13 | 14 |
| 805 | 242.04 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 813 | 242.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 856 | 242.20 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 17 |
| 858 | 242.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 863 | 242.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 912 | 242.35 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 11 |
| 918 | 242.36 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 2 |
| 930 | 242.41 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 16 |
| 931 | 242.41 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 20 |
| 937 | 242.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 16 |
| 986 | 242.55 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 987 | 242.55 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |