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Os03g0745600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0005 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.18 (0.0422) R2 : 0.473
β1 : 1.81 (0.161) R2dD : 0.169 R2D : 0.0705
β2 : 1.72 (0.103) R2dC : 0.322 R2C : 0.3
β3 : -1.2 (0.159) R2dE : 0.0761 R2E : -0.0269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.35 (0.092) R2dN8 : 0.0236 R2N8 : -0.0178
σ : 0.781
deviance : 281.25
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C
peak time of C : 9.2
E
wheather : temperature
threshold : 19.4
memory length : 219
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.33 0.765 6.13 2.01 1.72 -0.687 1.1 2.16 0.417 9.09 20.31 247 -- --
277.91 0.776 6.17 1.75 1.72 -1.16 0.957 -- 0.339 9.26 19.2 217 -- --
268.51 0.763 6.13 2.05 1.72 -0.702 -- 2.15 0.424 9.1 20.4 225 -- --
281.25 0.781 6.18 1.81 1.72 -1.2 -- -- 0.35 9.2 19.4 219 -- --
429.42 0.965 6.16 2.14 -- -1.01 -- 1.61 0.503 -- 20.54 553 -- --
310.32 0.826 6.22 1.38 1.7 -- 1.18 -- 0.172 8.92 -- -- -- --
314.94 0.831 6.22 1.42 1.7 -- -- -- 0.172 8.83 -- -- -- --
383.48 0.912 6.15 2.14 -- -1.05 -- -- 0.495 -- 26.4 656 -- --
357.75 0.881 6.24 -- 1.73 -0.574 -- -- 0.0795 8.92 19.42 169 -- --
480.05 1.02 6.26 1.42 -- -- -- -- 0.184 -- -- -- -- --
368.15 0.898 6.25 -- 1.71 -- -- -- 0.0136 8.77 -- -- -- --
456.7 0.995 6.26 -- -- -1.26 -- -- 0.181 -- 26.5 679 -- --
533.39 1.08 6.3 -- -- -- -- -- 0.0267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.13 temperature 20 90 < th dose independent rect. 16 18
24 258.42 temperature 20 90 < th dose independent sin 12 NA
31 258.79 temperature 30 270 < th dose dependent rect. 16 8
33 258.86 temperature 20 30 > th dose independent rect. 15 15
39 259.14 temperature 25 10 < th dose dependent rect. 17 9
40 259.18 temperature 25 90 < th dose dependent rect. 16 10
57 259.83 temperature 20 90 < th dose independent rect. 16 11
61 259.92 temperature 20 270 > th dose independent rect. 12 15
74 260.26 temperature 20 30 < th dose independent rect. 17 9
143 261.64 temperature 20 1440 > th dose independent rect. 3 1
144 261.65 radiation 1 1440 > th dose independent rect. 13 2
157 261.94 radiation 1 1440 < th dose independent rect. 13 2
158 261.94 radiation 1 1440 < th dose dependent rect. 13 2
161 261.97 temperature 20 1440 < th dose independent rect. 3 1
170 262.10 temperature 20 270 > th dose independent rect. 11 22
180 262.31 temperature 20 720 < th dose independent rect. 17 8
215 263.01 temperature 20 1440 > th dose independent rect. 2 4
216 263.01 radiation 1 1440 > th dose independent rect. 11 4
220 263.03 temperature 20 90 < th dose independent rect. 16 22
226 263.07 temperature 20 90 < th dose independent rect. 21 13
229 263.13 temperature 20 720 < th dose independent rect. 19 5
231 263.15 temperature 20 1440 < th dose independent rect. 2 4
264 263.59 temperature 20 1440 > th dose independent rect. 24 10
300 263.99 temperature 20 1440 < th dose independent rect. 24 10
325 264.17 temperature 20 720 < th dose independent rect. 21 3
338 264.28 temperature 20 270 > th dose independent rect. 7 23
360 264.41 radiation 20 4320 < th dose independent rect. 17 13
363 264.42 temperature 20 30 > th dose independent rect. 7 23
377 264.56 temperature 20 30 > th dose independent sin 15 NA
382 264.56 temperature 25 270 < th dose dependent sin 16 NA
384 264.57 radiation 10 4320 > th dose dependent rect. 17 1
423 264.80 temperature 20 1440 < th dose independent rect. 23 15
500 265.33 temperature 20 270 > th dose independent rect. 22 23
529 265.47 temperature 20 270 > th dose independent rect. 20 23
542 265.56 temperature 20 1440 > th dose independent sin 6 NA
543 265.58 temperature 20 720 < th dose independent rect. 23 1
544 265.58 radiation 1 1440 < th dose independent rect. 11 1
545 265.58 radiation 1 1440 < th dose dependent rect. 11 1
584 265.87 humidity 60 43200 < th dose dependent rect. 7 1
586 265.91 radiation 20 4320 < th dose independent rect. 17 7
592 265.95 temperature 20 4320 > th dose independent rect. 18 10
601 266.03 temperature 20 1440 < th dose independent sin 6 NA
624 266.20 temperature 20 4320 < th dose independent rect. 18 10
641 266.32 temperature 20 1440 > th dose independent rect. 5 1
652 266.37 temperature 20 4320 < th dose independent rect. 23 1
670 266.45 radiation 20 4320 < th dose independent rect. 17 5
679 266.51 temperature 20 270 < th dose independent rect. 3 23
708 266.68 temperature 20 4320 > th dose independent rect. 23 1
711 266.69 temperature 20 4320 < th dose independent rect. 20 5
718 266.70 temperature 25 90 < th dose dependent rect. 21 4
764 266.96 temperature 20 270 > th dose independent no NA NA
781 267.03 radiation 20 4320 < th dose independent rect. 17 3
790 267.07 temperature 20 270 < th dose independent no NA NA
793 267.08 atmosphere 1005 720 > th dose independent rect. 16 15
812 267.19 temperature 20 270 < th dose independent rect. 1 23
823 267.23 temperature 25 270 < th dose dependent rect. 21 2
836 267.29 radiation 40 4320 < th dose dependent rect. 17 1
872 267.47 temperature 20 4320 > th dose independent sin 13 NA
917 267.64 temperature 20 270 < th dose independent rect. 19 23
935 267.71 temperature 20 4320 < th dose independent sin 13 NA
940 267.73 atmosphere 1005 1440 < th dose independent rect. 20 2
945 267.75 atmosphere 1005 720 > th dose independent sin 12 NA