Os03g0795800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0005 family protein.
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Os03g0795800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0005 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.12 | 0.2 | 12.6 | 0.509 | 0.682 | -0.535 | 0.228 | 1.31 | 0.357 | 21.8 | 25.6 | 1361 | -- | -- |
| 20.18 | 0.209 | 12.7 | 0.42 | 0.65 | -0.537 | 0.308 | -- | 0.35 | 21.7 | 22.8 | 15892 | -- | -- |
| 18.3 | 0.199 | 12.7 | 0.505 | 0.692 | -0.55 | -- | 1.39 | 0.359 | 21.9 | 25.66 | 1309 | -- | -- |
| 19.25 | 0.204 | 12.7 | 0.704 | 0.686 | -0.697 | -- | -- | 0.358 | 21.7 | 19.8 | 27931 | -- | -- |
| 45.3 | 0.313 | 12.6 | 0.458 | -- | -0.483 | -- | 1.15 | 0.34 | -- | 25.5 | 1460 | -- | -- |
| 25.33 | 0.236 | 12.7 | -0.0236 | 0.663 | -- | 0.279 | -- | 0.0761 | 21.5 | -- | -- | -- | -- |
| 25.61 | 0.237 | 12.7 | -0.0338 | 0.662 | -- | -- | -- | 0.0758 | 21.5 | -- | -- | -- | -- |
| 42.98 | 0.307 | 12.7 | 0.105 | -- | -0.332 | -- | -- | 0.206 | -- | 23.4 | 1580 | -- | -- |
| 20.54 | 0.211 | 12.7 | -- | 0.673 | -0.325 | -- | -- | 0.185 | 21.1 | 23 | 1804 | -- | -- |
| 51.41 | 0.335 | 12.7 | -0.0293 | -- | -- | -- | -- | 0.0739 | -- | -- | -- | -- | -- |
| 25.64 | 0.237 | 12.7 | -- | 0.662 | -- | -- | -- | 0.0796 | 21.5 | -- | -- | -- | -- |
| 43.09 | 0.307 | 12.7 | -- | -- | -0.326 | -- | -- | 0.186 | -- | 23.14 | 1570 | -- | -- |
| 51.44 | 0.335 | 12.7 | -- | -- | -- | -- | -- | 0.0772 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 2 | 17.68 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 3 | 17.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 7 | 17.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 11 | 17.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 28 | 17.77 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 38 | 17.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 48 | 17.82 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 98 | 17.88 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 99 | 17.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 129 | 17.90 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 145 | 17.91 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 161 | 17.92 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 189 | 17.93 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 278 | 17.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 316 | 18.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 332 | 18.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 349 | 18.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 354 | 18.01 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 375 | 18.02 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 377 | 18.02 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 421 | 18.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 424 | 18.04 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 460 | 18.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 496 | 18.06 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 507 | 18.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 509 | 18.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 516 | 18.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 536 | 18.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 571 | 18.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 573 | 18.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 596 | 18.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 624 | 18.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 697 | 18.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 698 | 18.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 737 | 18.14 | radiation | 10 | 43200 | < th | dose independent | sin | 10 | NA |
| 740 | 18.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 744 | 18.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 756 | 18.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 757 | 18.15 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 758 | 18.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 775 | 18.15 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 782 | 18.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 783 | 18.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 800 | 18.16 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 806 | 18.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 847 | 18.18 | radiation | 30 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 949 | 18.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 965 | 18.22 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |