BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0795800 Os03g0795800|AK102207
(241 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G63310.1 | chr3:23387938-23388882 REVERSE LENGTH=240 312 1e-85
AT1G03070.1 | chr1:730148-731379 FORWARD LENGTH=248 293 5e-80
AT4G02690.1 | chr4:1186023-1187534 FORWARD LENGTH=249 266 1e-71
AT4G14730.1 | chr4:8448607-8450001 FORWARD LENGTH=236 245 1e-65
AT4G15470.1 | chr4:8843661-8845505 FORWARD LENGTH=257 226 9e-60
>AT3G63310.1 | chr3:23387938-23388882 REVERSE LENGTH=240
Length = 239
Score = 312 bits (800), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 151/227 (66%), Positives = 180/227 (79%), Gaps = 2/227 (0%)
Query: 1 MFGKGHDLEAGGSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVS 60
M+ + HDLE+ + PLYP M ESP+LRW+ I K+Y I+S+QL +T AVAA VVKV +S
Sbjct: 1 MWNQKHDLESAQT--PLYPMMSESPELRWSFIRKVYSIISIQLLVTIAVAATVVKVHSIS 58
Query: 61 EFFVSSNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTS 120
FF ++ AGFA YYHQKHPVN LLLG+FTVA++FAVG+TCA+TS
Sbjct: 59 VFFTTTTAGFALYILLILTPLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTS 118
Query: 121 GKVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGK 180
GKVI E+ LTAVVVISLT YTFWAAKRGHDFNFLGPFLF AV+VL++FS IQI FPLGK
Sbjct: 119 GKVILESVILTAVVVISLTLYTFWAAKRGHDFNFLGPFLFGAVIVLMVFSFIQILFPLGK 178
Query: 181 ISEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
IS MIYG LAS++F GYI+YDTDN+IKR++YDEY+WAAVSLYLDVIN
Sbjct: 179 ISVMIYGCLASIIFCGYIVYDTDNLIKRHSYDEYIWAAVSLYLDVIN 225
>AT1G03070.1 | chr1:730148-731379 FORWARD LENGTH=248
Length = 247
Score = 293 bits (751), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 176/226 (77%), Gaps = 2/226 (0%)
Query: 4 KGHDLEAG--GSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSE 61
+ D+E G G LYP M+ESP+LRW I K+Y I++ QL T AVA+ VV VR ++
Sbjct: 9 RKDDVETGREGGERSLYPTMLESPELRWGFIRKVYSIIAFQLLATIAVASTVVFVRPIAV 68
Query: 62 FFVSSNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSG 121
FF +++AG A YYHQKHPVN LLLG+FTVA++FAVG+TCA+TSG
Sbjct: 69 FFATTSAGLALWIVLIITPLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSG 128
Query: 122 KVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKI 181
KVI EAA LT VVV+SLT YTFWAAK+G+DFNFLGPFLF A++VL++F+LIQIFFPLG+I
Sbjct: 129 KVILEAAILTTVVVLSLTVYTFWAAKKGYDFNFLGPFLFGALIVLMVFALIQIFFPLGRI 188
Query: 182 SEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
S MIYG LA+++F GYI+YDTDN+IKRY+YDEY+WAAVSLYLD+IN
Sbjct: 189 SVMIYGCLAAIIFCGYIVYDTDNLIKRYSYDEYIWAAVSLYLDIIN 234
>AT4G02690.1 | chr4:1186023-1187534 FORWARD LENGTH=249
Length = 248
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 169/226 (74%), Gaps = 2/226 (0%)
Query: 4 KGHDLEAGGSSEP--LYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSE 61
+ D+E G SS LYP M E+P+LRW I K+Y I++ QL T AVAA VV VR ++
Sbjct: 9 RKDDVETGVSSRRPLLYPAMHENPELRWGFIRKVYSIIAFQLLATVAVAATVVTVRPIAL 68
Query: 62 FFVSSNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSG 121
FF ++ G A YYHQKHPVN LLLG+FT+A++F VG+TCA+T+G
Sbjct: 69 FFATTGLGLALYIVIIITPLIVLCPLYYYHQKHPVNYLLLGIFTLALAFVVGLTCAFTNG 128
Query: 122 KVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKI 181
KVI E+ LT+VVV+SLT YTFWAA++G+DFNFLGPFLF A+ VLI F+LIQI FPLG++
Sbjct: 129 KVILESVILTSVVVLSLTLYTFWAARKGYDFNFLGPFLFGALTVLIFFALIQILFPLGRV 188
Query: 182 SEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
S MIYG L S++F GYI+YDTDN+IKR+TYDEY+WAAVSLYLD+IN
Sbjct: 189 SVMIYGCLVSIIFCGYIVYDTDNLIKRHTYDEYIWAAVSLYLDIIN 234
>AT4G14730.1 | chr4:8448607-8450001 FORWARD LENGTH=236
Length = 235
Score = 245 bits (626), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 160/221 (72%), Gaps = 1/221 (0%)
Query: 7 DLEAGGSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFVSS 66
D+E GG +E LYPGM ES +LRWA I K+Y ILS+QL +T V+A V VR + EF +
Sbjct: 5 DIETGGGNE-LYPGMKESSELRWAFIRKLYSILSLQLLVTVGVSAVVYFVRPIPEFITET 63
Query: 67 NAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGKVIFE 126
+ G A + +KHP+N ++L +FT++ISF+VG+ C+ + G+++ E
Sbjct: 64 HRGLAVFFVILLLPLLLLWPLLAFEKKHPINCIVLSIFTLSISFSVGICCSLSQGRIVLE 123
Query: 127 AAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKISEMIY 186
AA LTAV+V LT YTFWA KRGHDF+FLGPFLF A++++++F+L+QIF PLGK+S MI+
Sbjct: 124 AAILTAVMVFGLTIYTFWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSSMIF 183
Query: 187 GGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
G+AS+VF GYII+DT+ +IK+ YDEY+ AA+ LYLDV+N
Sbjct: 184 SGIASIVFCGYIIFDTNQLIKKLNYDEYITAAIRLYLDVMN 224
>AT4G15470.1 | chr4:8843661-8845505 FORWARD LENGTH=257
Length = 256
Score = 226 bits (576), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 154/240 (64%), Gaps = 4/240 (1%)
Query: 3 GKGHDLEAGGSSEPLYPGMVESPD-LRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSE 61
GK DLE G LYPG+ + LRW I K+Y ILS QL +T ++A VV V++
Sbjct: 20 GKDIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVND 79
Query: 62 FFVSSNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSG 121
S YHQKHPVNL+LL LFTV++SF VG++CA T G
Sbjct: 80 LLTGSPG---ILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEG 136
Query: 122 KVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKI 181
+++ +A LT VV SLTAYTFWAAK+G DF+FLGP LF+++++L++ S IQ+FFPLG
Sbjct: 137 RIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPT 196
Query: 182 SEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVINXXXXXXXXXXXXDN 241
S +YGG ++LVF GYI+YDTDN+IKR+TYDEY+ A+V+LYLD++N DN
Sbjct: 197 SVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDILNLFLTILRILRQGDN 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,222,770
Number of extensions: 141937
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 5
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)