BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0795800 Os03g0795800|AK102207
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0795800 Protein of unknown function UPF0005 family pro... 401 e-112
Os07g0177300 Protein of unknown function UPF0005 family pro... 309 1e-84
Os03g0745600 Protein of unknown function UPF0005 family pro... 291 3e-79
Os03g0795600 Protein of unknown function UPF0005 family pro... 233 8e-62
Os05g0402300 Protein of unknown function UPF0005 family pro... 212 2e-55
Os07g0177200 Protein of unknown function UPF0005 family pro... 203 1e-52
Os11g0581900 Protein of unknown function UPF0005 family pro... 160 7e-40
>Os03g0795800 Protein of unknown function UPF0005 family protein
Length = 241
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/241 (88%), Positives = 213/241 (88%)
Query: 1 MFGKGHDLEAGGSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVS 60
MFGKGHDLEAGGSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVS
Sbjct: 1 MFGKGHDLEAGGSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVS 60
Query: 61 EFFVSSNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTS 120
EFFVSSNAGFA RYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTS
Sbjct: 61 EFFVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTS 120
Query: 121 GKVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGK 180
GKVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGK
Sbjct: 121 GKVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGK 180
Query: 181 ISEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVINXXXXXXXXXXXXD 240
ISEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN D
Sbjct: 181 ISEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVINLFLALLRVLRAAD 240
Query: 241 N 241
N
Sbjct: 241 N 241
>Os07g0177300 Protein of unknown function UPF0005 family protein
Length = 244
Score = 309 bits (791), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/228 (71%), Positives = 188/228 (82%), Gaps = 2/228 (0%)
Query: 2 FGKGHDLEAG--GSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGV 59
+ KG D+EAG G + LYPGM E P++RWALI KIYVILS+QL +TAAVAA VVKVR +
Sbjct: 4 YEKGGDVEAGTSGGARELYPGMTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKVRAI 63
Query: 60 SEFFVSSNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYT 119
S FFVSS+AG YYHQKHPVNL+LLGLFTVAISFAVGMTCA+T
Sbjct: 64 SHFFVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFT 123
Query: 120 SGKVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLG 179
SGKVI E+A LT VVV SLTAYTFWAAKRG DF+FLGPFLF++++VL++F+ IQI FPLG
Sbjct: 124 SGKVILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLG 183
Query: 180 KISEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
+IS+MIYGG+ASL+FSGYI+YDTDNIIKRYTYD+YVWAAVSLYLDVIN
Sbjct: 184 RISQMIYGGIASLIFSGYIVYDTDNIIKRYTYDQYVWAAVSLYLDVIN 231
>Os03g0745600 Protein of unknown function UPF0005 family protein
Length = 249
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 181/223 (81%), Gaps = 1/223 (0%)
Query: 5 GHDLEAGGSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFV 64
G D EAG + PLYP M+ESP LRWA + K+Y ILS+Q+ +T AVA+ VV VR V+ FFV
Sbjct: 14 GGDAEAG-MARPLYPMMLESPQLRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALFFV 72
Query: 65 SSNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGKVI 124
S+ AGFA YY+Q+HPVNLLLL LFT AISFAVG+TCA+T G+VI
Sbjct: 73 STPAGFALYIFLIILPFIVLCPLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGEVI 132
Query: 125 FEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKISEM 184
E+A LTA VV+SLTAYTFWAA+RGHDF+FLGPFLF+AVM+L++F+LIQ+FFPLG++S M
Sbjct: 133 LESAILTAAVVVSLTAYTFWAARRGHDFSFLGPFLFAAVMILMVFALIQVFFPLGRVSLM 192
Query: 185 IYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
IYGGLA+LVF GYI+YDTDN+IKRY+YDEYVWAAV+LYLDVIN
Sbjct: 193 IYGGLAALVFCGYIVYDTDNLIKRYSYDEYVWAAVALYLDVIN 235
>Os03g0795600 Protein of unknown function UPF0005 family protein
Length = 247
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 153/226 (67%), Gaps = 5/226 (2%)
Query: 7 DLEA----GGSSEPLYPGMVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEF 62
D+EA G +YP M+E+ LRWA I K+YVI+SVQL +T AVA V V + F
Sbjct: 8 DVEACYPGGAPGGGMYPYMIENAQLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTF 67
Query: 63 FVSSNAG-FAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSG 121
F + Y+ KHP+NL L LFTV ISF+VG+ C +G
Sbjct: 68 FQARTPEVLVAYVIIIISPLIMMLPMIYFRNKHPINLFFLLLFTVCISFSVGLGCLSKNG 127
Query: 122 KVIFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKI 181
VIF+AA +TA +VI LT YTFWAAKRG+DF FLGPFLF+A +VL L+++I IF P+G+
Sbjct: 128 TVIFQAAGMTAAIVIGLTCYTFWAAKRGYDFEFLGPFLFAATLVLFLYAIITIFLPMGRT 187
Query: 182 SEMIYGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
+++YG +A+L+FSG+IIYDTDN+IKRYTYDEYV AA++LYLD+IN
Sbjct: 188 GKLVYGCVAALIFSGFIIYDTDNLIKRYTYDEYVAAAITLYLDIIN 233
>Os05g0402300 Protein of unknown function UPF0005 family protein
Length = 264
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 148/222 (66%), Gaps = 5/222 (2%)
Query: 7 DLEAGGSSEPLYPGMVESPD-LRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFVS 65
DLEAG + E LYPG+ LRW + K+Y IL+ QL +T AV+A V ++ S
Sbjct: 31 DLEAG-TGETLYPGISRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATLSS 89
Query: 66 SNAGFAXXXXXXXXXXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGKVIF 125
S +Y KHP N + LGLFT+ +SF++G+ CA T GK++
Sbjct: 90 SPT---LALVLAVLPFVLMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVL 146
Query: 126 EAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKISEMI 185
EA LT+ VV SLTAYTFWA+K+G +F +LGP LFSA+++L++ S IQ+FFPLG +
Sbjct: 147 EALILTSAVVASLTAYTFWASKKGKEFGYLGPILFSALVLLVVISFIQVFFPLGSGPVAL 206
Query: 186 YGGLASLVFSGYIIYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
+GGL +LVFSG+IIYDT+N+IKR+TYD+Y+WA+V LYLD++N
Sbjct: 207 FGGLGALVFSGFIIYDTENLIKRHTYDDYIWASVELYLDILN 248
>Os07g0177200 Protein of unknown function UPF0005 family protein
Length = 247
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 144/209 (68%), Gaps = 2/209 (0%)
Query: 21 MVESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFVS-SNAGFAXXXXXXXX 79
M+E P+LRWA I K+Y I++ QL +T A+AA V V + FF++ + A A
Sbjct: 25 MIERPELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFFLARTPASLAAFVLVIVA 84
Query: 80 XXXXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTC-AYTSGKVIFEAAALTAVVVISL 138
+ +KHP+NL+LL LFT+ +S A+G+ C + +G I EAA+LT +V L
Sbjct: 85 PLIVMLPTMFLRKKHPINLILLALFTICMSCAIGLGCLSSKAGIAIIEAASLTFGLVFGL 144
Query: 139 TAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKISEMIYGGLASLVFSGYI 198
T YTFWAAKRGHDF+FL PFL +A +VL+L+ LIQ+ P GK++ +YG +A+LVFSG+I
Sbjct: 145 TLYTFWAAKRGHDFSFLRPFLVAAFLVLVLYGLIQMLVPTGKVATTVYGCVAALVFSGFI 204
Query: 199 IYDTDNIIKRYTYDEYVWAAVSLYLDVIN 227
IYDTDN+IKR+ YDEYV AA+SLYLD +N
Sbjct: 205 IYDTDNLIKRHAYDEYVTAAISLYLDTVN 233
>Os11g0581900 Protein of unknown function UPF0005 family protein
Length = 258
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 138/206 (66%), Gaps = 1/206 (0%)
Query: 23 ESPDLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFVS-SNAGFAXXXXXXXXXX 81
E P LRWA + K+Y IL++Q A+TAA+A VR + FF + S A +
Sbjct: 43 EDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPRFFAAGSLASWLVYLAILLCPF 102
Query: 82 XXXXXXRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGKVIFEAAALTAVVVISLTAY 141
Y +KHPVNLLLLGLFT+ S + + + GKV+ +AA LTAV VI LT +
Sbjct: 103 IVLWPMLKYREKHPVNLLLLGLFTLCESLTIAVCSSTFLGKVVLQAAILTAVAVIGLTIF 162
Query: 142 TFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKISEMIYGGLASLVFSGYIIYD 201
TFWAA RGHDF F+ PFL ++++VL+ + +IQI FPLG+ IYG LA+++FS +I++D
Sbjct: 163 TFWAAHRGHDFTFMYPFLAASLLVLLAYLIIQICFPLGRAGMTIYGCLATVLFSAFIVFD 222
Query: 202 TDNIIKRYTYDEYVWAAVSLYLDVIN 227
T+ +IKR+TY+EYV AA+SLYLDVIN
Sbjct: 223 TNQLIKRHTYNEYVIAAISLYLDVIN 248
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,499,553
Number of extensions: 210026
Number of successful extensions: 601
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 7
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)