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Os05g0402300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0005 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.00778) R2 : 0.0545
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.084 (0.0164) R2dN8 : 0.0704 R2N8 : 0.0545
σ : 0.147
deviance : 9.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
8.26 0.135 13.5 0.123 0.0853 0.184 0.316 -0.126 0.0961 4.64 69.99 671 -- --
8.27 0.134 13.5 0.131 0.0869 0.181 0.35 -- 0.0982 4.83 70 670 -- --
8.51 0.136 13.5 0.13 0.0774 0.161 -- -0.142 0.1 4.02 70 670 -- --
8.58 0.136 13.5 0.133 0.0787 0.154 -- -- 0.0957 4 69.45 677 -- --
8.51 0.136 13.5 0.107 -- 0.168 -- -0.155 0.0624 -- 72.09 2657 -- --
8.95 0.14 13.5 0.155 0.0632 -- 0.106 -- 0.1 0.804 -- -- -- --
8.98 0.14 13.5 0.151 0.0655 -- -- -- 0.1 23.6 -- -- -- --
8.54 0.136 13.5 0.132 -- 0.165 -- -- 0.0706 -- 72.91 2657 -- --
8.87 0.139 13.5 -- 0.0413 0.166 -- -- 0.103 3.44 66.85 2099 -- --
9.25 0.142 13.5 0.153 -- -- -- -- 0.101 -- -- -- -- --
9.58 0.145 13.5 -- 0.0672 -- -- -- 0.0834 23.7 -- -- -- --
8.94 0.139 13.5 -- -- 0.162 -- -- 0.0757 -- 70 1172 -- --
9.87 0.147 13.5 -- -- -- -- -- 0.084 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 7.96 temperature 30.0 90 < th dose independent rect. 9 10
2 7.99 humidity 70.0 720 > th dose independent rect. 16 12
6 8.05 temperature 30.0 720 < th dose independent rect. 9 2
9 8.06 precipitation 0.1 90 < th dose independent rect. 19 14
10 8.06 precipitation 0.1 90 < th dose dependent rect. 19 14
11 8.07 humidity 80.0 720 < th dose dependent rect. 12 1
13 8.08 temperature 10.0 90 > th dose independent rect. 9 10
14 8.08 atmosphere 1015.0 90 < th dose independent rect. 9 10
15 8.08 temperature 10.0 90 > th dose independent rect. 19 14
17 8.08 humidity 50.0 90 > th dose independent rect. 19 14
19 8.08 atmosphere 995.0 90 > th dose independent rect. 19 14
20 8.08 radiation 40.0 90 < th dose independent rect. 19 14
21 8.09 humidity 70.0 720 < th dose independent rect. 12 1
22 8.09 precipitation 0.1 90 < th dose independent rect. 9 10
23 8.09 wind 9.0 90 < th dose independent rect. 19 14
24 8.09 wind 3.0 90 < th dose independent rect. 9 21
25 8.09 precipitation 0.1 90 < th dose dependent rect. 9 10
27 8.10 wind 9.0 90 < th dose independent rect. 9 10
28 8.10 temperature 30.0 720 < th dose independent rect. 16 19
31 8.11 humidity 70.0 1440 < th dose independent rect. 16 1
32 8.11 humidity 70.0 1440 > th dose independent rect. 16 2
34 8.11 temperature 30.0 720 < th dose independent rect. 7 5
40 8.12 temperature 30.0 270 < th dose independent rect. 9 8
43 8.12 atmosphere 995.0 90 > th dose independent rect. 9 10
45 8.12 temperature 20.0 90 > th dose dependent rect. 4 5
50 8.13 temperature 30.0 720 < th dose independent rect. 23 12
52 8.13 temperature 30.0 90 < th dose independent rect. 19 14
55 8.14 humidity 70.0 720 > th dose independent rect. 16 5
60 8.14 humidity 60.0 720 > th dose independent rect. 24 19
62 8.14 atmosphere 995.0 43200 < th dose dependent rect. 17 6
63 8.14 atmosphere 995.0 43200 < th dose dependent rect. 16 8
68 8.15 atmosphere 995.0 43200 < th dose independent rect. 18 5
69 8.15 atmosphere 995.0 43200 > th dose independent rect. 18 6
70 8.15 temperature 30.0 270 < th dose independent rect. 22 15
73 8.15 temperature 30.0 270 < th dose independent rect. 22 20
77 8.15 atmosphere 995.0 43200 < th dose dependent rect. 18 4
79 8.16 temperature 30.0 30 < th dose independent rect. 9 7
81 8.16 humidity 50.0 90 > th dose independent rect. 9 10
82 8.16 atmosphere 995.0 43200 > th dose independent rect. 17 10
83 8.16 atmosphere 995.0 43200 < th dose independent rect. 17 10
90 8.16 wind 5.0 90 < th dose dependent rect. 9 21
113 8.17 temperature 30.0 30 < th dose independent rect. 24 15
118 8.17 wind 9.0 90 < th dose dependent rect. 9 10
124 8.18 atmosphere 995.0 43200 < th dose independent rect. 16 14
126 8.18 atmosphere 995.0 43200 > th dose independent rect. 16 15
128 8.18 humidity 70.0 1440 > th dose independent rect. 16 17
136 8.18 atmosphere 995.0 43200 < th dose dependent rect. 15 11
137 8.19 atmosphere 995.0 43200 > th dose independent sin 12 NA
138 8.19 atmosphere 995.0 43200 < th dose independent sin 13 NA
140 8.19 humidity 70.0 720 < th dose independent rect. 15 5
149 8.19 wind 1.0 90 > th dose independent rect. 9 10
166 8.19 humidity 70.0 720 < th dose independent rect. 12 21
169 8.20 humidity 70.0 720 < th dose independent sin 14 NA
178 8.20 humidity 70.0 720 < th dose independent rect. 12 8
183 8.20 radiation 1.0 90 > th dose independent rect. 9 9
239 8.21 humidity 70.0 720 < th dose independent rect. 15 18
240 8.21 temperature 30.0 30 < th dose independent rect. 24 19
252 8.21 radiation 40.0 720 > th dose dependent rect. 12 1
256 8.21 wind 3.0 30 < th dose dependent rect. 9 19
297 8.22 radiation 1.0 90 > th dose independent rect. 9 20
305 8.23 wind 1.0 1440 < th dose independent rect. 14 1
310 8.23 wind 5.0 270 < th dose independent rect. 21 7
313 8.23 temperature 30.0 720 < th dose independent rect. 24 10
317 8.23 temperature 30.0 720 < th dose independent rect. 16 12
340 8.23 temperature 20.0 90 > th dose dependent rect. 6 3
342 8.23 humidity 70.0 720 < th dose dependent rect. 12 7
345 8.23 wind 5.0 30 < th dose dependent rect. 21 9
364 8.24 humidity 70.0 720 > th dose independent sin 14 NA
367 8.24 wind 1.0 1440 > th dose independent rect. 4 1
369 8.24 wind 5.0 270 < th dose independent rect. 22 5
411 8.24 wind 1.0 90 > th dose dependent rect. 15 18
459 8.25 wind 5.0 1440 < th dose dependent rect. 14 1
460 8.25 temperature 25.0 4320 > th dose dependent rect. 20 2
462 8.25 temperature 25.0 4320 > th dose dependent rect. 18 4
464 8.25 wind 7.0 270 < th dose dependent rect. 22 5
469 8.25 wind 9.0 270 < th dose dependent rect. 21 7
484 8.25 radiation 10.0 720 < th dose dependent rect. 7 21
488 8.25 radiation 10.0 720 < th dose dependent rect. 23 22
491 8.26 wind 1.0 1440 < th dose independent rect. 4 1
494 8.26 temperature 20.0 270 > th dose independent rect. 4 3
497 8.26 wind 3.0 30 < th dose independent rect. 22 8
498 8.26 temperature 30.0 720 < th dose independent rect. 17 10
507 8.26 temperature 30.0 270 < th dose independent rect. 5 13
511 8.26 wind 1.0 90 > th dose independent rect. 19 14
535 8.26 atmosphere 1015.0 90 < th dose independent rect. 9 19
547 8.26 humidity 60.0 720 > th dose independent rect. 13 23
549 8.26 atmosphere 995.0 43200 > th dose independent rect. 16 23
550 8.26 atmosphere 995.0 43200 < th dose independent rect. 16 23
556 8.26 wind 5.0 10 < th dose dependent rect. 24 4
568 8.26 temperature 10.0 90 > th dose dependent rect. 19 14
598 8.27 wind 5.0 43200 < th dose independent rect. 18 11
601 8.27 humidity 70.0 720 < th dose independent rect. 8 12
625 8.27 atmosphere 995.0 43200 > th dose independent rect. 22 18
626 8.27 atmosphere 1015.0 10 < th dose independent rect. 10 18
631 8.27 atmosphere 995.0 43200 < th dose independent rect. 22 19
632 8.27 temperature 30.0 720 < th dose independent rect. 6 20
661 8.27 atmosphere 995.0 43200 < th dose independent rect. 18 22
663 8.27 humidity 70.0 720 > th dose independent rect. 7 23
670 8.27 wind 1.0 1440 < th dose dependent rect. 10 1
673 8.27 radiation 1.0 720 > th dose dependent rect. 12 1
684 8.27 radiation 10.0 720 < th dose dependent rect. 17 10
699 8.28 atmosphere 995.0 43200 < th dose independent no NA NA
700 8.28 humidity 60.0 14400 < th dose independent rect. 17 1
709 8.28 atmosphere 1015.0 270 < th dose independent rect. 21 7
726 8.28 wind 5.0 43200 > th dose independent rect. 18 11
770 8.28 atmosphere 995.0 43200 < th dose independent rect. 23 17
771 8.28 wind 3.0 90 > th dose independent rect. 15 18
782 8.28 humidity 50.0 720 > th dose independent rect. 16 19
806 8.28 humidity 70.0 720 > th dose independent rect. 7 21
818 8.28 radiation 10.0 720 < th dose independent rect. 7 21
837 8.28 humidity 70.0 720 < th dose independent rect. 15 23
851 8.28 humidity 70.0 720 < th dose dependent sin 18 NA
897 8.29 humidity 70.0 720 < th dose independent no NA NA
898 8.29 atmosphere 995.0 43200 > th dose independent sin 4 NA
901 8.29 wind 3.0 10 < th dose independent rect. 24 4
904 8.29 atmosphere 1015.0 270 < th dose independent rect. 22 5
912 8.29 radiation 20.0 720 < th dose independent rect. 16 9
931 8.29 atmosphere 1015.0 270 < th dose independent rect. 22 14
950 8.29 temperature 15.0 270 > th dose independent rect. 4 17
977 8.29 temperature 15.0 270 > th dose independent rect. 3 19
979 8.29 temperature 30.0 30 < th dose independent rect. 9 19