BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0402300 Os05g0402300|AK070043
(264 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15470.1 | chr4:8843661-8845505 FORWARD LENGTH=257 248 2e-66
AT4G02690.1 | chr4:1186023-1187534 FORWARD LENGTH=249 204 3e-53
AT1G03070.1 | chr1:730148-731379 FORWARD LENGTH=248 202 1e-52
AT3G63310.1 | chr3:23387938-23388882 REVERSE LENGTH=240 194 3e-50
AT4G14730.1 | chr4:8448607-8450001 FORWARD LENGTH=236 175 2e-44
>AT4G15470.1 | chr4:8843661-8845505 FORWARD LENGTH=257
Length = 256
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/257 (52%), Positives = 167/257 (64%), Gaps = 8/257 (3%)
Query: 12 PAGYRRAPEMKEKVDASA---VDLEAGTGE-TLYPGISRGESALRWGFVRKVYGIXXXXX 67
P GY A +D SA +DLE G GE TLYPG+S GE+ LRWGF+RKVYGI
Sbjct: 4 PYGY--ASVSMSGIDRSAGKDIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQL 61
Query: 68 XXXXXXXXXXXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHYQHKHPHNFVYLGLFTL 127
+ + Y KHP N + L LFT+
Sbjct: 62 LLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTV 121
Query: 128 CLSFSIGVACANTQGKIVLEALILTSAVVASLTAYTFWASKKGKEFGYLGPILFSALVLL 187
LSF++GV+CA T+G+IVL+ALILT +VV SLTAYTFWA+KKGK+F +LGPILF++L++L
Sbjct: 122 SLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIIL 181
Query: 188 VVISFIQVFFPLGSGPVALFGGLGALVFSGFIIYDTENLIKRHTYDDYIWASVELYLDIL 247
VV SFIQ+FFPLG VA++GG ALVF G+I+YDT+NLIKR TYD+YI ASV LYLDIL
Sbjct: 182 VVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDIL 241
Query: 248 NLFLYILNMIRSMQSDN 264
NLFL IL ++R Q DN
Sbjct: 242 NLFLTILRILR--QGDN 256
>AT4G02690.1 | chr4:1186023-1187534 FORWARD LENGTH=249
Length = 248
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 142/237 (59%), Gaps = 7/237 (2%)
Query: 31 DLEAGTGET---LYPGISRGESALRWGFVRKVYGIXXXXXXXXXXXXXXXXXHXXXXXXX 87
D+E G LYP + LRWGF+RKVY I
Sbjct: 12 DVETGVSSRRPLLYPAMHENPE-LRWGFIRKVYSIIAFQLLATVAVAATVVTVRPIALFF 70
Query: 88 XXX---XXXXXXXXXXXXXXXXXXYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKI 144
Y+Y KHP N++ LG+FTL L+F +G+ CA T GK+
Sbjct: 71 ATTGLGLALYIVIIITPLIVLCPLYYYHQKHPVNYLLLGIFTLALAFVVGLTCAFTNGKV 130
Query: 145 VLEALILTSAVVASLTAYTFWASKKGKEFGYLGPILFSALVLLVVISFIQVFFPLGSGPV 204
+LE++ILTS VV SLT YTFWA++KG +F +LGP LF AL +L+ + IQ+ FPLG V
Sbjct: 131 ILESVILTSVVVLSLTLYTFWAARKGYDFNFLGPFLFGALTVLIFFALIQILFPLGRVSV 190
Query: 205 ALFGGLGALVFSGFIIYDTENLIKRHTYDDYIWASVELYLDILNLFLYILNMIRSMQ 261
++G L +++F G+I+YDT+NLIKRHTYD+YIWA+V LYLDI+NLFLY+L ++R++Q
Sbjct: 191 MIYGCLVSIIFCGYIVYDTDNLIKRHTYDEYIWAAVSLYLDIINLFLYLLTVLRALQ 247
>AT1G03070.1 | chr1:730148-731379 FORWARD LENGTH=248
Length = 247
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 145/246 (58%), Gaps = 8/246 (3%)
Query: 19 PEMKEKVDASAVDLEAGTGETLYPGISRGESALRWGFVRKVYGIXXXXXXXXXXXXXXXX 78
P K+ V+ G +LYP + LRWGF+RKVY I
Sbjct: 7 PYRKDDVETG----REGGERSLYPTMLESPE-LRWGFIRKVYSIIAFQLLATIAVASTVV 61
Query: 79 XHXXXXXXXXXX---XXXXXXXXXXXXXXXXXXYHYQHKHPHNFVYLGLFTLCLSFSIGV 135
Y+Y KHP N++ LG+FT+ L+F++G+
Sbjct: 62 FVRPIAVFFATTSAGLALWIVLIITPLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGL 121
Query: 136 ACANTQGKIVLEALILTSAVVASLTAYTFWASKKGKEFGYLGPILFSALVLLVVISFIQV 195
CA T GK++LEA ILT+ VV SLT YTFWA+KKG +F +LGP LF AL++L+V + IQ+
Sbjct: 122 TCAFTSGKVILEAAILTTVVVLSLTVYTFWAAKKGYDFNFLGPFLFGALIVLMVFALIQI 181
Query: 196 FFPLGSGPVALFGGLGALVFSGFIIYDTENLIKRHTYDDYIWASVELYLDILNLFLYILN 255
FFPLG V ++G L A++F G+I+YDT+NLIKR++YD+YIWA+V LYLDI+NLFL +L
Sbjct: 182 FFPLGRISVMIYGCLAAIIFCGYIVYDTDNLIKRYSYDEYIWAAVSLYLDIINLFLALLT 241
Query: 256 MIRSMQ 261
+ R+ +
Sbjct: 242 IFRAAE 247
>AT3G63310.1 | chr3:23387938-23388882 REVERSE LENGTH=240
Length = 239
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 146/235 (62%), Gaps = 5/235 (2%)
Query: 31 DLEAGTGETLYPGISRGESALRWGFVRKVYGIXXXXXXXXXXXXXXXX-XHXXXXXXXXX 89
DLE+ LYP +S LRW F+RKVY I H
Sbjct: 7 DLESAQTP-LYPMMSESPE-LRWSFIRKVYSIISIQLLVTIAVAATVVKVHSISVFFTTT 64
Query: 90 XX--XXXXXXXXXXXXXXXXXYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLE 147
Y+Y KHP N++ LG+FT+ L+F++G+ CA T GK++LE
Sbjct: 65 TAGFALYILLILTPLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILE 124
Query: 148 ALILTSAVVASLTAYTFWASKKGKEFGYLGPILFSALVLLVVISFIQVFFPLGSGPVALF 207
++ILT+ VV SLT YTFWA+K+G +F +LGP LF A+++L+V SFIQ+ FPLG V ++
Sbjct: 125 SVILTAVVVISLTLYTFWAAKRGHDFNFLGPFLFGAVIVLMVFSFIQILFPLGKISVMIY 184
Query: 208 GGLGALVFSGFIIYDTENLIKRHTYDDYIWASVELYLDILNLFLYILNMIRSMQS 262
G L +++F G+I+YDT+NLIKRH+YD+YIWA+V LYLD++NLFL +L ++R++ S
Sbjct: 185 GCLASIIFCGYIVYDTDNLIKRHSYDEYIWAAVSLYLDVINLFLSLLTLLRAVDS 239
>AT4G14730.1 | chr4:8448607-8450001 FORWARD LENGTH=236
Length = 235
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 133/232 (57%), Gaps = 4/232 (1%)
Query: 31 DLEAGTGETLYPGISRGESALRWGFVRKVYGIXXXXXXXXXXXXXXXXXHXXXXXXXXXX 90
D+E G G LYPG+ + S LRW F+RK+Y I
Sbjct: 5 DIETGGGNELYPGM-KESSELRWAFIRKLYSILSLQLLVTVGVSAVVYFVRPIPEFITET 63
Query: 91 ---XXXXXXXXXXXXXXXXXXYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLE 147
++ KHP N + L +FTL +SFS+G+ C+ +QG+IVLE
Sbjct: 64 HRGLAVFFVILLLPLLLLWPLLAFEKKHPINCIVLSIFTLSISFSVGICCSLSQGRIVLE 123
Query: 148 ALILTSAVVASLTAYTFWASKKGKEFGYLGPILFSALVLLVVISFIQVFFPLGSGPVALF 207
A ILT+ +V LT YTFWA K+G +F +LGP LF AL++++V + +Q+F PLG +F
Sbjct: 124 AAILTAVMVFGLTIYTFWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSSMIF 183
Query: 208 GGLGALVFSGFIIYDTENLIKRHTYDDYIWASVELYLDILNLFLYILNMIRS 259
G+ ++VF G+II+DT LIK+ YD+YI A++ LYLD++NLFL +L +I +
Sbjct: 184 SGIASIVFCGYIIFDTNQLIKKLNYDEYITAAIRLYLDVMNLFLSLLGIISN 235
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,477,929
Number of extensions: 159483
Number of successful extensions: 519
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 8
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)