BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0592400 Os06g0592400|AK062788
(104 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0592400 Similar to Cytosolic aldehyde dehydrogenase RF2C 216 3e-57
Os01g0591000 NAD-dependent aldehyde dehydrogenase family pr... 134 1e-32
Os01g0591300 Similar to Cytosolic aldehyde dehydrogenase RF2D 134 1e-32
Os02g0730000 Mitochondrial aldehyde dehydrogenase ALDH2a 101 1e-22
Os06g0270900 Similar to RF2 (EC 1.2.1.3) (T cytoplasm male ... 99 9e-22
AK100358 99 9e-22
Os04g0464200 Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (B... 78 1e-15
Os08g0424500 Similar to Betaine aldehyde dehydrogenase 76 6e-15
AK110128 69 1e-12
AK107309 67 2e-12
>Os06g0592400 Similar to Cytosolic aldehyde dehydrogenase RF2C
Length = 104
Score = 216 bits (550), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 ETTIVVREINFGCRTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYF 60
ETTIVVREINFGCRTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYF
Sbjct: 1 ETTIVVREINFGCRTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYF 60
Query: 61 AMDRSCPFGGRKMSGFGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
AMDRSCPFGGRKMSGFGKDDSMHALDKFLAVKSVVTPVHGSPWF
Sbjct: 61 AMDRSCPFGGRKMSGFGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
>Os01g0591000 NAD-dependent aldehyde dehydrogenase family protein
Length = 502
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 14 RTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKM 73
+TVEEAI++AN TRYGLAAG+VT++IDVAN ++RSIRAG +W+NCY D PFGG KM
Sbjct: 412 KTVEEAIQKANSTRYGLAAGIVTKNIDVANTVSRSIRAGAIWINCYLGFDPDVPFGGYKM 471
Query: 74 SGFGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
SGFGKD M AL+K+L K+VVTP++ +PW
Sbjct: 472 SGFGKDMGMDALEKYLHTKAVVTPLYNTPWL 502
>Os01g0591300 Similar to Cytosolic aldehyde dehydrogenase RF2D
Length = 507
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 83/111 (74%), Gaps = 8/111 (7%)
Query: 1 ETTIVVREINFGC-------RTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGV 53
E TI EI FG +TVEEAIE+AN T+YGLAAG+VT+++++AN ++RS+RAG
Sbjct: 398 EMTIAQEEI-FGPVMSLMKFKTVEEAIEKANCTKYGLAAGIVTKNLNIANMVSRSVRAGT 456
Query: 54 VWVNCYFAMDRSCPFGGRKMSGFGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
VWVNCYFA D PFGG KMSGFG+D M A+DK+L VK+V+T V SPW+
Sbjct: 457 VWVNCYFAFDPDAPFGGYKMSGFGRDQGMVAMDKYLQVKTVITAVPDSPWY 507
>Os02g0730000 Mitochondrial aldehyde dehydrogenase ALDH2a
Length = 553
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%)
Query: 15 TVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMS 74
TVEE + RAN T YGLAAG+ T+ +D AN +AR++R G VWVN Y D + PFGG KMS
Sbjct: 464 TVEEVVRRANATPYGLAAGVFTQRLDAANTLARALRVGTVWVNTYDVFDAAVPFGGYKMS 523
Query: 75 GFGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
G G++ +++L +L K+VVTP+ + W
Sbjct: 524 GVGREKGVYSLRNYLQTKAVVTPIKDAAWL 553
>Os06g0270900 Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer
factor 2)
Length = 549
Score = 98.6 bits (244), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 16 VEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMSG 75
+ E I+RAN ++YGLAAG+ T +++ AN + R++R G VWVNC+ D + PFGG K SG
Sbjct: 461 LNEVIKRANASQYGLAAGVFTNNLNTANTLTRALRVGTVWVNCFDVFDAAIPFGGYKQSG 520
Query: 76 FGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
G++ + +L +L VK+VVTP+ + W
Sbjct: 521 IGREKGIDSLKNYLQVKAVVTPIKNAAWL 549
>AK100358
Length = 549
Score = 98.6 bits (244), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 16 VEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMSG 75
+ E I+RAN ++YGLAAG+ T +++ AN + R++R G VWVNC+ D + PFGG K SG
Sbjct: 461 LNEVIKRANASQYGLAAGVFTNNLNTANTLTRALRVGTVWVNCFDVFDAAIPFGGYKQSG 520
Query: 76 FGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
G++ + +L +L VK+VVTP+ + W
Sbjct: 521 IGREKGIDSLKNYLQVKAVVTPIKNAAWL 549
>Os04g0464200 Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)
Length = 505
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 55/90 (61%)
Query: 14 RTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKM 73
RT EA+E AN T YGLA +++ D++ R++++I++G+VW+NC P+GG K
Sbjct: 407 RTEREAVELANDTHYGLAGAVISNDLERCERISKAIQSGIVWINCSQPCFVQAPWGGNKR 466
Query: 74 SGFGKDDSMHALDKFLAVKSVVTPVHGSPW 103
SGFG++ LD +L+VK V P+
Sbjct: 467 SGFGRELGQWGLDNYLSVKQVTKYCSDEPY 496
>Os08g0424500 Similar to Betaine aldehyde dehydrogenase
Length = 503
Score = 75.9 bits (185), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 15 TVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMS 74
T EEAIE AN T YGLA +++ D + R+ I AG++WVNC P+GG K S
Sbjct: 406 TEEEAIELANDTHYGLAGAVLSGDRERCQRLTEEIDAGIIWVNCSQPCFCQAPWGGNKRS 465
Query: 75 GFGKDDSMHALDKFLAVKSVVTPVHGSPW 103
GFG++ +D +L+VK V PW
Sbjct: 466 GFGRELGEGGIDNYLSVKQVTEYASDEPW 494
>AK110128
Length = 496
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 1 ETTIVVREINFG--C-----RTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGV 53
E +V+E FG C +T E+AI+ N + YGLAA + T++++ A ++ ++RAG
Sbjct: 386 EDMKIVKEEIFGPVCSIAKFKTKEDAIKLGNASTYGLAAAVHTKNLNTAIEVSNALRAGT 445
Query: 54 VWVNCYFAMDRSCPFGGRKMSGFGKDDSMHALDKFLAVKSV 94
VWVN Y + PFGG K SG G++ AL + K+V
Sbjct: 446 VWVNTYNTLHHQMPFGGYKESGIGRELGEDALANYTQTKTV 486
>AK107309
Length = 497
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 17 EEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMSGF 76
++ I AN + YGLAA + +RD+ A A ++AG VWVNCY + PFGG K SG
Sbjct: 410 KDLIRIANDSIYGLAAAVFSRDVSRALETAHKLKAGTVWVNCYNMLVPQVPFGGYKASGI 469
Query: 77 GKDDSMHALDKFLAVKSV 94
G++ +AL + +K+V
Sbjct: 470 GRELGEYALANYTNIKAV 487
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,460,370
Number of extensions: 122006
Number of successful extensions: 283
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 10
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)