Os06g0270900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer factor 2).
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Os06g0270900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer factor 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.99 | 0.479 | 15.5 | 0.0997 | 2.18 | -2.58 | -1.54 | -3.65 | 0.00203 | 16.1 | 0.24 | 312 | 21.3 | -- |
| 116.66 | 0.503 | 15.5 | 0.0854 | 2.21 | -2.27 | 0.431 | -- | 0.0395 | 16.3 | 0.3 | 305 | 22.2 | -- |
| 108.09 | 0.484 | 15.5 | 0.122 | 2.25 | -2.51 | -- | -2.43 | -0.00502 | 16.1 | 0.2603 | 309 | 21.3 | -- |
| 116.79 | 0.503 | 15.5 | 0.164 | 2.22 | -2.29 | -- | -- | -0.00126 | 16.2 | 0.2794 | 301 | 22 | -- |
| 134.47 | 0.54 | 15.6 | 0.00312 | -- | -4.06 | -- | -2.44 | -0.0855 | -- | 0.3678 | 369 | 0.786 | -- |
| 177.93 | 0.625 | 15.5 | 0.292 | 3.82 | -- | 1.09 | -- | -0.0225 | 16.7 | -- | -- | -- | -- |
| 181.03 | 0.63 | 15.5 | 0.299 | 3.82 | -- | -- | -- | -0.0169 | 16.6 | -- | -- | -- | -- |
| 131.75 | 0.535 | 15.5 | 0.115 | -- | -3.96 | -- | -- | -0.0529 | -- | 0.5228 | 359 | 1.26 | -- |
| 117.38 | 0.505 | 15.5 | -- | 2.23 | -2.29 | -- | -- | -0.0198 | 16.2 | 0.27 | 301 | 21.9 | -- |
| 958.42 | 1.45 | 15.5 | 0.152 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 183.38 | 0.633 | 15.5 | -- | 3.82 | -- | -- | -- | -0.0501 | 16.6 | -- | -- | -- | -- |
| 129.34 | 0.53 | 15.5 | -- | -- | -4.01 | -- | -- | 0.0891 | -- | 0.3 | 402 | 1.71 | -- |
| 959.03 | 1.45 | 15.5 | -- | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.81 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 2 | 93.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 3 | 93.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 5 | 95.38 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 7 | 95.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 3 |
| 8 | 95.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 9 | 96.28 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 11 | 96.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 14 | 96.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 16 | 96.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 17 | 96.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 20 | 96.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 21 | 96.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 22 | 96.65 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 25 | 96.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 28 | 97.14 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 32 | 97.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 33 | 97.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 34 | 97.77 | wind | 3.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 38 | 98.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 40 | 98.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 42 | 98.75 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 43 | 98.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 46 | 98.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 47 | 98.75 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 49 | 98.75 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 52 | 98.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 53 | 98.76 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 56 | 98.78 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 61 | 98.90 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 69 | 99.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 88 | 101.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 89 | 101.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 90 | 101.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 94 | 101.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 142 | 102.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 152 | 103.25 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 184 | 104.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 236 | 104.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 293 | 106.18 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 297 | 106.33 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 5 |
| 299 | 106.33 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 330 | 107.27 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 397 | 108.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 404 | 108.56 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 435 | 109.15 | wind | 7.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 440 | 109.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 442 | 109.28 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 443 | 109.28 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 445 | 109.28 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 446 | 109.28 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 447 | 109.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 454 | 109.42 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 462 | 109.67 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 467 | 109.82 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 19 |
| 468 | 109.82 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 491 | 109.90 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 497 | 110.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 18 |
| 498 | 110.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 552 | 111.27 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 563 | 111.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 6 |
| 564 | 111.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 576 | 111.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 577 | 111.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 578 | 111.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 579 | 111.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 580 | 111.60 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 585 | 111.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 586 | 111.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 587 | 111.60 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 599 | 111.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 609 | 111.80 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 636 | 111.92 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 661 | 112.22 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 668 | 112.29 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 683 | 112.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 693 | 112.58 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 727 | 112.86 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 737 | 112.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 791 | 113.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 793 | 113.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 797 | 113.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 801 | 113.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 803 | 113.53 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 827 | 113.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 828 | 113.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 835 | 113.83 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 837 | 113.83 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 847 | 113.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 848 | 113.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 856 | 114.04 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 857 | 114.04 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 860 | 114.04 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 862 | 114.04 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 863 | 114.04 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 910 | 114.51 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 919 | 114.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 923 | 114.63 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 943 | 114.83 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 990 | 115.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 992 | 115.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 993 | 115.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 996 | 115.25 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 6 |