Os02g0730000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial aldehyde dehydrogenase ALDH2a.
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Os02g0730000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial aldehyde dehydrogenase ALDH2a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.35 | 0.762 | 5.92 | 1.81 | 1.73 | 7.6 | 4.03 | 6.1 | 0.917 | 15.7 | 1.13 | 734 | 16.1 | -- |
| 267.33 | 0.762 | 5.91 | 2.02 | 1.11 | 6.41 | 1.81 | -- | 1.04 | 17.1 | 1.51 | 760 | 16.6 | -- |
| 303.46 | 0.811 | 5.82 | 2.06 | 2.09 | 8.06 | -- | 4.97 | 1.03 | 15.8 | 1.134 | 754 | 16 | -- |
| 272.19 | 0.768 | 5.91 | 2.07 | 1.24 | 6.41 | -- | -- | 0.989 | 16.8 | 1.6 | 767 | 16.3 | -- |
| 355.66 | 0.878 | 5.82 | 2.14 | -- | 6.7 | -- | 5.87 | 1.17 | -- | 1.55 | 730 | 17.2 | -- |
| 461.09 | 1.01 | 5.97 | 1.47 | 1.8 | -- | -0.132 | -- | 0.62 | 0.656 | -- | -- | -- | -- |
| 461.16 | 1.01 | 5.97 | 1.47 | 1.8 | -- | -- | -- | 0.621 | 0.646 | -- | -- | -- | -- |
| 310.98 | 0.821 | 5.81 | 1.87 | -- | 5.53 | -- | -- | 0.997 | -- | 1.62 | 724 | 16.8 | -- |
| 377.12 | 0.904 | 5.95 | -- | 0.95 | 5.72 | -- | -- | 0.879 | 17.1 | 1.779 | 766 | 16.2 | -- |
| 663.61 | 1.2 | 5.93 | 1.54 | -- | -- | -- | -- | 0.652 | -- | -- | -- | -- | -- |
| 518.21 | 1.06 | 6 | -- | 1.82 | -- | -- | -- | 0.457 | 0.684 | -- | -- | -- | -- |
| 397.91 | 0.929 | 5.96 | -- | -- | 4.81 | -- | -- | 0.749 | -- | 2.2 | 732 | 16.5 | -- |
| 725.76 | 1.26 | 5.97 | -- | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 265.25 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 8 | 269.45 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 10 | 270.65 | humidity | 70 | 720 | > th | dose dependent | sin | 21 | NA |
| 11 | 270.88 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 12 |
| 39 | 276.46 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 44 | 276.76 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 49 | 277.97 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 52 | 278.49 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 90 | 282.59 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 106 | 283.71 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 21 |
| 109 | 283.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 127 | 284.90 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 13 |
| 132 | 285.53 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 139 | 285.87 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 17 |
| 146 | 286.18 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 18 |
| 147 | 286.31 | humidity | 80 | 720 | < th | dose independent | sin | 21 | NA |
| 156 | 286.79 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 170 | 287.63 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 193 | 288.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 205 | 288.54 | humidity | 60 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 207 | 288.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 224 | 289.20 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 230 | 289.36 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 238 | 289.73 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 245 | 289.86 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 258 | 290.27 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 22 |
| 281 | 290.81 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 291 | 291.16 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 8 |
| 327 | 292.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 337 | 292.22 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 347 | 292.27 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 415 | 292.79 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 425 | 293.04 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 456 | 293.76 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 462 | 293.91 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 484 | 294.45 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 495 | 294.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 497 | 294.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 511 | 295.04 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 544 | 295.38 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 607 | 295.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 718 | 296.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 761 | 296.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 816 | 297.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 866 | 298.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 872 | 298.25 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 907 | 298.69 | humidity | 60 | 720 | > th | dose dependent | no | NA | NA |
| 914 | 298.77 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 985 | 299.53 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |