Os04g0464200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH).
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Os04g0464200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.9 | 0.345 | 12.2 | 0.799 | 0.377 | -0.629 | -1.35 | -2.06 | 0.147 | 22.4 | 25.49 | 6 | -- | -- |
| 55.09 | 0.348 | 12.2 | 1.02 | 0.358 | -0.84 | -1.23 | -- | 0.194 | 22 | 25.92 | 11 | -- | -- |
| 60.3 | 0.362 | 12.2 | 0.969 | 0.403 | -0.686 | -- | -1.06 | 0.147 | 23.2 | 26.7 | 2 | -- | -- |
| 60.54 | 0.365 | 12.2 | 1.05 | 0.396 | -0.793 | -- | -- | 0.173 | 23.1 | 26.7 | 2 | -- | -- |
| 68.55 | 0.386 | 12.2 | 1.05 | -- | -0.91 | -- | -0.459 | 0.2 | -- | 25.6 | 2 | -- | -- |
| 66.37 | 0.382 | 12.2 | 0.919 | 0.552 | -- | -0.847 | -- | 0.157 | 23.9 | -- | -- | -- | -- |
| 69.13 | 0.389 | 12.2 | 0.951 | 0.562 | -- | -- | -- | 0.158 | 0.477 | -- | -- | -- | -- |
| 68.6 | 0.387 | 12.2 | 1.09 | -- | -0.963 | -- | -- | 0.21 | -- | 25.6 | 2 | -- | -- |
| 88.7 | 0.441 | 12.2 | -- | 0.457 | -0.56 | -- | -- | 0.052 | 23.8 | 27 | 9 | -- | -- |
| 88.92 | 0.441 | 12.2 | 0.97 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 92.95 | 0.451 | 12.2 | -- | 0.576 | -- | -- | -- | 0.0525 | 0.56 | -- | -- | -- | -- |
| 99.45 | 0.466 | 12.2 | -- | -- | -0.8 | -- | -- | 0.0837 | -- | 25.6 | 2 | -- | -- |
| 113.75 | 0.498 | 12.2 | -- | -- | -- | -- | -- | 0.0601 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 51.67 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 19 | 52.28 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 33 | 52.37 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 34 | 52.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 35 | 52.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 40 | 52.47 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 45 | 52.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 56 | 52.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 11 |
| 57 | 52.85 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 58 | 52.90 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 65 | 52.99 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 77 | 53.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 79 | 53.19 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 120 | 53.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 159 | 53.63 | temperature | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 164 | 53.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 242 | 53.91 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 249 | 53.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 250 | 53.94 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |
| 267 | 53.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 271 | 54.00 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 280 | 54.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 299 | 54.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 305 | 54.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 326 | 54.08 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 365 | 54.12 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 539 | 54.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 547 | 54.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 557 | 54.38 | atmosphere | 1000 | 10 | > th | dose independent | sin | 21 | NA |
| 591 | 54.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 728 | 54.59 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 818 | 54.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 882 | 54.78 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 21 |
| 886 | 54.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 889 | 54.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 918 | 54.83 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 963 | 54.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |