Os08g0424500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Betaine aldehyde dehydrogenase.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0424500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Betaine aldehyde dehydrogenase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.15 | 0.254 | 12.6 | -0.866 | 0.683 | -0.955 | -0.784 | 0.285 | -0.18 | 18.6 | 2.677 | 1481 | -- | -- |
| 29.22 | 0.252 | 12.5 | -0.831 | 0.685 | -0.96 | -0.779 | -- | -0.17 | 18.5 | 2.732 | 1475 | -- | -- |
| 30.67 | 0.258 | 12.6 | -0.842 | 0.681 | -0.936 | -- | 0.224 | -0.181 | 18.5 | 2.806 | 1471 | -- | -- |
| 30.71 | 0.258 | 12.5 | -0.821 | 0.679 | -0.958 | -- | -- | -0.169 | 18.5 | 2.69 | 1471 | -- | -- |
| 31.89 | 0.263 | 12.5 | -0.886 | -- | -1.19 | -- | 1.72 | -0.15 | -- | 2.732 | 2201 | -- | -- |
| 40.14 | 0.297 | 12.5 | -0.648 | 0.664 | -- | -0.804 | -- | -0.0321 | 18 | -- | -- | -- | -- |
| 41.72 | 0.302 | 12.5 | -0.64 | 0.659 | -- | -- | -- | -0.0351 | 18 | -- | -- | -- | -- |
| 33.33 | 0.269 | 12.5 | -0.768 | -- | -1.29 | -- | -- | -0.146 | -- | 2.565 | 2202 | -- | -- |
| 45.28 | 0.313 | 12.5 | -- | 0.645 | -0.606 | -- | -- | -0.0988 | 18.6 | 8.4 | 1507 | -- | -- |
| 64.25 | 0.375 | 12.5 | -0.659 | -- | -- | -- | -- | -0.05 | -- | -- | -- | -- | -- |
| 52.53 | 0.339 | 12.5 | -- | 0.669 | -- | -- | -- | 0.0362 | 18 | -- | -- | -- | -- |
| 47.83 | 0.322 | 12.5 | -- | -- | -1.15 | -- | -- | -0.0777 | -- | 5.945 | 2166 | -- | -- |
| 75.72 | 0.406 | 12.5 | -- | -- | -- | -- | -- | 0.0232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.24 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 2 | 29.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 5 | 29.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 6 | 29.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 16 | 29.40 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 19 | 29.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 22 | 29.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 28 | 29.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 36 | 29.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 40 | 29.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 42 | 29.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 44 | 29.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 45 | 29.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 53 | 29.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 88 | 29.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 104 | 29.67 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 107 | 29.68 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 182 | 29.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 201 | 29.82 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 203 | 29.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 209 | 29.82 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 220 | 29.83 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 227 | 29.84 | radiation | 10 | 1440 | > th | dose independent | sin | 17 | NA |
| 232 | 29.85 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 302 | 29.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 335 | 29.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 340 | 29.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 366 | 30.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 411 | 30.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 443 | 30.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 444 | 30.07 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 451 | 30.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 601 | 30.23 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 637 | 30.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 641 | 30.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 689 | 30.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 693 | 30.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 721 | 30.37 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 734 | 30.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 751 | 30.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 754 | 30.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 755 | 30.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 760 | 30.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 762 | 30.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 763 | 30.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 795 | 30.41 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 811 | 30.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 852 | 30.44 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 856 | 30.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 871 | 30.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 913 | 30.50 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 934 | 30.52 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 967 | 30.55 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |