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Os01g0591000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent aldehyde dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0522) R2 : 0.627
β1 : -2.12 (0.179) R2dD : 0.218 R2D : -0.296
β2 : 2.17 (0.0931) R2dC : 0.446 R2C : 0.334
β3 : -26.3 (1.99) R2dE : 7.63 R2E : -7.53
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -56.2 (4.38) R2dD*E : 6.99 R2D*E : -6.81
γ1 : -0.514 (0.0786) R2dN8 : 0.0485 R2N8 : -0.249
σ : 0.676
deviance : 210.79
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C
peak time of C : 7.45
E
wheather : radiation
threshold : 1.252
memory length : 1269
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.92
open length of G : 3.22

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.36 0.681 10.7 -2.14 2.17 -26.4 0.399 -56.4 -0.514 7.44 1.252 1276 8.92 3.21
290.17 0.799 11.1 -0.566 2.21 -1.29 0.068 -- -0.397 7.53 3.125 927 9.12 3.97
210.79 0.676 10.7 -2.12 2.17 -26.3 -- -56.2 -0.514 7.45 1.252 1269 8.92 3.22
243.42 0.727 11.2 -0.581 2.22 -1.43 -- -- -0.497 7.33 5.089 1094 9.87 4.13
454.11 0.992 10.7 -2.04 -- -26 -- -55.8 -0.49 -- 1.295 1172 9.1 3.33
291.82 0.801 11.1 -0.549 2.2 -- 0.0999 -- -0.391 7.52 -- -- -- --
291.84 0.8 11.1 -0.547 2.2 -- -- -- -0.392 7.52 -- -- -- --
269.32 0.764 11.2 -0.607 -- -2.52 -- -- -0.579 -- 105 876 10.6 4.02
243.55 0.727 11.2 -- 1.96 -1.51 -- -- -0.555 7.18 28.48 1138 11.5 1.77
551.51 1.1 11.2 -0.514 -- -- -- -- -0.357 -- -- -- -- --
299.72 0.81 11.1 -- 2.2 -- -- -- -0.331 7.54 -- -- -- --
280.13 0.78 11.2 -- -- -2.38 -- -- -0.498 -- 118.7 875 10.8 3.77
558.47 1.1 11.2 -- -- -- -- -- -0.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.33 radiation 1 1440 < th dose independent rect. 9 3
2 218.33 radiation 1 1440 < th dose dependent rect. 9 3
23 223.85 radiation 1 1440 < th dose independent rect. 13 1
24 223.85 radiation 1 1440 < th dose dependent rect. 13 1
29 224.41 radiation 1 1440 > th dose independent rect. 9 5
30 224.44 radiation 20 1440 < th dose dependent rect. 11 1
36 224.81 radiation 1 1440 > th dose independent rect. 9 1
38 225.40 radiation 1 1440 > th dose independent rect. 11 1
46 226.30 radiation 1 1440 > th dose independent rect. 13 1
51 227.33 humidity 70 14400 < th dose dependent rect. 21 1
90 232.77 atmosphere 995 43200 < th dose independent rect. 24 16
93 232.94 atmosphere 995 43200 < th dose dependent rect. 13 11
97 233.25 atmosphere 995 43200 > th dose independent rect. 1 15
110 234.17 radiation 20 4320 > th dose dependent rect. 7 1
123 234.64 atmosphere 995 43200 > th dose independent sin 3 NA
128 234.84 radiation 1 1440 > th dose independent rect. 4 1
138 234.84 radiation 1 1440 > th dose dependent rect. 4 1
148 234.90 humidity 60 14400 < th dose independent rect. 6 1
150 234.90 humidity 60 14400 < th dose independent rect. 20 1
152 234.90 radiation 20 14400 > th dose independent rect. 17 1
203 234.90 humidity 60 14400 < th dose dependent rect. 6 1
207 234.90 radiation 20 14400 > th dose dependent rect. 17 1
260 235.09 wind 9 43200 < th dose independent rect. 20 18
268 235.36 wind 3 43200 > th dose dependent rect. 6 1
286 235.52 radiation 20 4320 > th dose independent rect. 7 1
289 235.57 atmosphere 995 43200 > th dose independent rect. 12 1
301 235.93 atmosphere 995 43200 < th dose independent sin 3 NA
304 236.00 radiation 20 1440 < th dose dependent rect. 11 17
309 236.07 radiation 20 1440 < th dose dependent rect. 11 14
311 236.09 humidity 80 1440 < th dose independent rect. 7 7
324 236.28 wind 9 43200 > th dose independent rect. 20 18
336 236.47 wind 3 43200 > th dose independent rect. 6 4
349 236.57 atmosphere 995 43200 < th dose independent rect. 7 19
351 236.60 wind 7 43200 > th dose dependent rect. 19 1
413 237.04 atmosphere 995 43200 < th dose dependent rect. 14 1
419 237.09 humidity 90 1440 < th dose dependent rect. 11 3
421 237.10 atmosphere 995 43200 < th dose dependent rect. 13 3
428 237.22 radiation 10 1440 > th dose independent rect. 11 22
435 237.28 wind 3 43200 < th dose independent rect. 6 4
445 237.35 humidity 90 1440 < th dose dependent rect. 12 1
465 237.47 wind 1 43200 > th dose dependent rect. 6 4
469 237.49 atmosphere 995 43200 > th dose independent rect. 7 18
470 237.51 atmosphere 995 43200 < th dose independent rect. 11 4
481 237.58 wind 3 43200 > th dose independent rect. 2 8
486 237.63 atmosphere 995 43200 < th dose dependent sin 17 NA
490 237.69 humidity 60 14400 > th dose independent rect. 7 1
497 237.79 wind 9 43200 > th dose dependent rect. 20 11
500 237.84 wind 3 43200 < th dose independent rect. 2 8
505 237.88 humidity 50 1440 > th dose dependent rect. 11 3
507 237.90 humidity 90 14400 > th dose independent rect. 21 2
509 237.90 radiation 10 1440 < th dose dependent sin 20 NA
512 237.93 wind 5 43200 < th dose dependent rect. 6 4
527 238.03 wind 9 43200 < th dose dependent rect. 6 4
528 238.05 humidity 50 1440 > th dose dependent rect. 12 1
545 238.19 humidity 90 720 > th dose dependent rect. 20 1
604 238.58 humidity 90 14400 < th dose independent rect. 18 1
605 238.59 wind 9 43200 < th dose dependent rect. 6 1
607 238.60 wind 7 43200 > th dose dependent rect. 19 19
617 238.64 wind 3 4320 > th dose independent rect. 8 1
639 238.81 atmosphere 995 43200 > th dose independent rect. 9 6
644 238.85 atmosphere 995 43200 < th dose independent rect. 7 9
650 238.88 humidity 80 14400 > th dose dependent rect. 18 1
685 239.15 wind 9 43200 > th dose independent rect. 20 12
687 239.17 wind 3 43200 > th dose independent rect. 21 13
689 239.17 wind 5 43200 < th dose dependent rect. 1 9
710 239.30 humidity 80 1440 < th dose dependent rect. 19 20
713 239.32 radiation 10 1440 > th dose independent rect. 15 23
724 239.37 wind 3 4320 < th dose independent rect. 8 1
742 239.44 wind 9 43200 < th dose independent rect. 5 9
749 239.47 humidity 60 14400 > th dose independent rect. 5 3
750 239.47 humidity 80 1440 < th dose dependent sin 3 NA
758 239.50 wind 9 43200 < th dose independent rect. 20 12
774 239.54 atmosphere 995 43200 < th dose independent sin 20 NA
792 239.59 wind 3 43200 < th dose independent rect. 21 13
808 239.64 radiation 20 1440 < th dose independent rect. 11 2
814 239.66 atmosphere 1000 43200 < th dose dependent rect. 9 1
819 239.67 humidity 80 1440 < th dose dependent rect. 2 13
822 239.68 humidity 80 1440 < th dose dependent rect. 6 9
825 239.68 humidity 80 1440 < th dose dependent rect. 2 15
849 239.71 wind 7 43200 > th dose dependent rect. 6 8
924 239.92 wind 9 43200 < th dose independent rect. 24 14
930 239.93 radiation 10 1440 > th dose independent rect. 8 23
978 240.09 radiation 30 4320 < th dose independent rect. 7 1
986 240.13 humidity 90 14400 > th dose independent rect. 17 6