BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0562200 Os06g0562200|AK107448
(207 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0562200 Bet v I allergen family protein 316 7e-87
Os02g0226801 Bet v I allergen family protein 239 9e-64
Os05g0473000 Streptomyces cyclase/dehydrase family protein 155 3e-38
Os03g0297600 Streptomyces cyclase/dehydrase family protein 154 4e-38
Os01g0827800 152 1e-37
Os10g0573400 Conserved hypothetical protein 150 7e-37
Os05g0213500 Conserved hypothetical protein 127 5e-30
Os02g0255300 113 1e-25
Os02g0255500 Similar to Extensin (Fragment) 112 2e-25
Os06g0527800 Conserved hypothetical protein 109 1e-24
Os06g0528300 Conserved hypothetical protein 106 1e-23
>Os06g0562200 Bet v I allergen family protein
Length = 207
Score = 316 bits (810), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/192 (82%), Positives = 159/192 (82%)
Query: 1 MEAHVERALREGLTEEERAALEPAVMAHHTFPPSXXXXXXXXXXXXSLVTQRVAAPVRAV 60
MEAHVERALREGLTEEERAALEPAVMAHHTFPPS SLVTQRVAAPVRAV
Sbjct: 1 MEAHVERALREGLTEEERAALEPAVMAHHTFPPSTTTATTAAATCTSLVTQRVAAPVRAV 60
Query: 61 WPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHI 120
WPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHI
Sbjct: 61 WPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHI 120
Query: 121 ISFRVVGGQHRLRNYRSVTSVTEFQXXXXXXXXXXXYCXXXXXXXXXXPDGNTAEDTRMF 180
ISFRVVGGQHRLRNYRSVTSVTEFQ YC PDGNTAEDTRMF
Sbjct: 121 ISFRVVGGQHRLRNYRSVTSVTEFQPPAAGPGPAPPYCVVVESYVVDVPDGNTAEDTRMF 180
Query: 181 TDTVVKLNLQML 192
TDTVVKLNLQML
Sbjct: 181 TDTVVKLNLQML 192
>Os02g0226801 Bet v I allergen family protein
Length = 207
Score = 239 bits (611), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 139/194 (71%), Gaps = 5/194 (2%)
Query: 1 MEAHVERALREGL-TEEERAALEPAVMAHHTFPPSXXXXXXXXX-XXXSLVTQRVAAPVR 58
ME H+ERALRE + +E ER LE V AHHTFP + SLV QRV AP+
Sbjct: 1 MEPHMERALREAVASEAERRELEGVVRAHHTFPAAERAAGPGRRPTCTSLVAQRVDAPLA 60
Query: 59 AVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDR 118
AVWPIVR F NPQRYKHF+++C LAAGDGA+VGSVREV VVSGLPASTSTERLE+LDDDR
Sbjct: 61 AVWPIVRGFANPQRYKHFIKSCELAAGDGATVGSVREVAVVSGLPASTSTERLEILDDDR 120
Query: 119 HIISFRVVGGQHRLRNYRSVTSVTEFQXXXXXXXXXXXYCXXXXXXXXXXPDGNTAEDTR 178
H++SFRVVGG HRLRNYRSVTSVTEF YC P+GNT EDTR
Sbjct: 121 HVLSFRVVGGDHRLRNYRSVTSVTEFS---SPSSPPRPYCVVVESYVVDVPEGNTEEDTR 177
Query: 179 MFTDTVVKLNLQML 192
MFTDTVVKLNLQ L
Sbjct: 178 MFTDTVVKLNLQKL 191
>Os05g0473000 Streptomyces cyclase/dehydrase family protein
Length = 216
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 100/150 (66%), Gaps = 11/150 (7%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDG----ASVGSVREVTVVSGL 102
S V Q +AAPV AVW +VR F PQ YKHF+R+C L GDG +VGSVREV VVSGL
Sbjct: 59 SAVVQAIAAPVDAVWSVVRRFDRPQAYKHFIRSCRLLDGDGDGGAVAVGSVREVRVVSGL 118
Query: 103 PASTSTERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSVTEFQXXXXXXXXXXXYCXXXX 162
PA++S ERLE+LDD+R ++SFRVVGG+HRL NYRSVT+V E Y
Sbjct: 119 PATSSRERLEILDDERRVLSFRVVGGEHRLSNYRSVTTVHETAAGAAAAVVVESY----- 173
Query: 163 XXXXXXPDGNTAEDTRMFTDTVVKLNLQML 192
P GNTA++TRMF DT+V+ NLQ L
Sbjct: 174 --VVDVPHGNTADETRMFVDTIVRCNLQSL 201
>Os03g0297600 Streptomyces cyclase/dehydrase family protein
Length = 229
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 96/146 (65%), Gaps = 7/146 (4%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
S V Q VAAP AVW +VR F PQ YK FVR+CAL AGDG VG++REV VVSGLPA++
Sbjct: 75 SAVVQHVAAPAAAVWSVVRRFDQPQAYKRFVRSCALLAGDGG-VGTLREVRVVSGLPAAS 133
Query: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSVTEFQXXXXXXXXXXXYCXXXXXXXX 166
S ERLE+LDD+ H++SFRVVGG+HRL+NY SVT+V
Sbjct: 134 SRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAATVVVES------YVV 187
Query: 167 XXPDGNTAEDTRMFTDTVVKLNLQML 192
P GNT EDTR+F DT+VK NLQ L
Sbjct: 188 DVPPGNTPEDTRVFVDTIVKCNLQSL 213
>Os01g0827800
Length = 208
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
S V Q +AAP AVW +VR F PQ YK F+++C L GDG VGSVREV VVSGLPA++
Sbjct: 50 STVVQAIAAPADAVWSVVRRFDRPQAYKKFIKSCRLVDGDGGEVGSVREVRVVSGLPATS 109
Query: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSVTEFQXXXXXXXXXXXYCXXXXXXXX 166
S ERLE+LDDDR ++SFR+VGG+HRL NYRSVT+V E
Sbjct: 110 SRERLEVLDDDRRVLSFRIVGGEHRLANYRSVTTVHEAAAPAMA--------VVVESYVV 161
Query: 167 XXPDGNTAEDTRMFTDTVVKLNLQML 192
P GNT E+TR+F DT+V+ NLQ L
Sbjct: 162 DVPPGNTWEETRVFVDTIVRCNLQSL 187
>Os10g0573400 Conserved hypothetical protein
Length = 212
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 106/188 (56%), Gaps = 23/188 (12%)
Query: 12 GLTEEERAALEPAVMAHHTFPPSXXXXXXXXXXXXSLVTQRVAAPVRAVWPIVRSFGNPQ 71
GLT EE A + V AHH + SL+ QR+ AP AVW +VR F PQ
Sbjct: 15 GLTAEEYAQVRATVEAHHRY-------AVGPGQCSSLLAQRIHAPPAAVWAVVRRFDCPQ 67
Query: 72 RYKHFVRTCALAA-------GDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHIISFR 124
YKHF+R+C L G+ G +REV+V+SGLPASTSTERL++LDD + F
Sbjct: 68 VYKHFIRSCVLRPDPHHDDNGNDLRPGRLREVSVISGLPASTSTERLDLLDDAHRVFGFT 127
Query: 125 VVGGQHRLRNYRSVTSVTEFQXXXXXXXXXXXYCXXXXXXXXXXPDGNTAEDTRMFTDTV 184
+ GG+HRLRNYRSVT+V++ PDGNT +DTR+F DTV
Sbjct: 128 ITGGEHRLRNYRSVTTVSQLDEICT---------LVLESYIVDVPDGNTEDDTRLFADTV 178
Query: 185 VKLNLQML 192
++LNLQ L
Sbjct: 179 IRLNLQKL 186
>Os05g0213500 Conserved hypothetical protein
Length = 209
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 7/146 (4%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
S + + + APV VW +VRSF PQRYK FV C + GD +GSVREV V +GLPA+T
Sbjct: 53 SALVKHIKAPVHLVWSLVRSFDQPQRYKPFVSRCVVRGGD-LEIGSVREVNVKTGLPATT 111
Query: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSVTEFQXXXXXXXXXXXYCXXXXXXXX 166
STERLE+LDDD HI+S + VGG HRLRNY S+ +V
Sbjct: 112 STERLELLDDDEHILSVKFVGGDHRLRNYSSIVTV------HPESIDGRPGTLVIESFVV 165
Query: 167 XXPDGNTAEDTRMFTDTVVKLNLQML 192
PDGNT ++T F + V+K NL L
Sbjct: 166 DVPDGNTKDETCYFVEAVIKCNLTSL 191
>Os02g0255300
Length = 177
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
S VT R+ APV VW IVR F P ++ FVR C + +VG VREV SG PA +
Sbjct: 18 SAVTMRINAPVHLVWSIVRRFEEPHIFQPFVRGCTMRGSTSLAVGCVREVDFKSGFPAKS 77
Query: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSV-TSVTEFQXXXXXXXXXXXYCXXXXXXX 165
S ERLE+LDD H+ R++GG HRL+NY SV T+ E +
Sbjct: 78 SVERLEILDDKEHVFGVRIIGGDHRLKNYSSVLTAKPEVIDGEPATLVSESF-------V 130
Query: 166 XXXPDGNTAEDTRMFTDTVVKLNLQML 192
P+GNTA++TR F + +++ NL+ L
Sbjct: 131 VDVPEGNTADETRHFVEFLIRCNLRSL 157
>Os02g0255500 Similar to Extensin (Fragment)
Length = 204
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 83/147 (56%), Gaps = 10/147 (6%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
S V + + APV VW +VR F PQ +K FV C + +GSVREV V SGLPA+
Sbjct: 49 SAVAKHIKAPVHLVWSLVRRFDQPQLFKPFVSRCEMKGN--IEIGSVREVNVKSGLPATR 106
Query: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSV-TEFQXXXXXXXXXXXYCXXXXXXX 165
STERLE+LDD+ HI+S R VGG HRL+NY S+ +V E +
Sbjct: 107 STERLELLDDNEHILSVRFVGGDHRLKNYSSILTVHPEVIDGRPGTLVIESF-------V 159
Query: 166 XXXPDGNTAEDTRMFTDTVVKLNLQML 192
P+GNT ++T F + ++K NL+ L
Sbjct: 160 VDVPEGNTKDETCYFVEALLKCNLKSL 186
>Os06g0527800 Conserved hypothetical protein
Length = 206
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 9/147 (6%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
S V + + AP++ VW +VR F PQ +K FVR C + + G VREV V SGLPA+
Sbjct: 57 SFVAKHIKAPLQTVWSLVRRFDQPQLFKPFVRKCVMRENIIVT-GCVREVNVQSGLPATR 115
Query: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSV-TEFQXXXXXXXXXXXYCXXXXXXX 165
STERLE+LDD+ HI+ + +GG H L+NY S+ ++ +E +
Sbjct: 116 STERLELLDDNEHILKVKFIGGDHMLKNYSSILTIHSEVIDGQLGTLVVESF-------V 168
Query: 166 XXXPDGNTAEDTRMFTDTVVKLNLQML 192
PDGNT +D F + V++ NL L
Sbjct: 169 VDIPDGNTKDDICYFIENVLRCNLMTL 195
>Os06g0528300 Conserved hypothetical protein
Length = 206
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
S + + AP+ VW +VR F PQ +K FVR C + A+ G +REV V SGLPA+
Sbjct: 57 SFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRENIIAT-GCIREVNVQSGLPATR 115
Query: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSV-TEFQXXXXXXXXXXXYCXXXXXXX 165
STERLE+LDD+ HI+ +GG H L+NY S+ +V +E +
Sbjct: 116 STERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDGQLGTLVVESF-------I 168
Query: 166 XXXPDGNTAEDTRMFTDTVVKLNLQML 192
P+GNT +D F + V++ NL+ L
Sbjct: 169 VDVPEGNTKDDISYFIENVLRCNLRTL 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,086,319
Number of extensions: 162531
Number of successful extensions: 438
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 11
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)