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Os03g0297600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Streptomyces cyclase/dehydrase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.67 (0.0538) R2 : 0.586
β1 : -2.46 (0.212) R2dD : 0.152 R2D : 0.00371
β2 : 1.87 (0.14) R2dC : 0.165 R2C : 0.0374
β3 : 3.45 (0.246) R2dE : 0.188 R2E : 0.15
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.31 (0.925) R2dD*E : 0.0492 R2D*E : -0.0561
γ1 : -1.51 (0.116) R2dN8 : 0.218 R2N8 : 0.128
σ : 0.994
deviance : 455.31
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C
peak time of C : 5.28
E
wheather : humidity
threshold : 76.45
memory length : 1015
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.85
open length of G : 18.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
451.53 0.998 8.67 -2.44 1.86 3.44 -1.37 5.93 -1.52 5.4 76 1015 4.05 18
484.46 1.03 8.6 -1.77 1.89 3.46 -1.8 -- -1.32 5.26 74.75 1094 2.63 19.4
455.31 0.994 8.67 -2.46 1.87 3.45 -- 6.31 -1.51 5.28 76.45 1015 3.85 18.2
493.07 1.03 8.6 -1.79 1.91 3.47 -- -- -1.3 5.18 74.77 1092 2.58 19.4
516.31 1.06 8.72 -2.22 -- 3.32 -- 3.83 -1.6 -- 76.76 801 6.65 20
699.64 1.24 8.67 -2.18 1.58 -- -1.68 -- -1.61 5.92 -- -- -- --
706.53 1.24 8.67 -2.19 1.57 -- -- -- -1.61 5.95 -- -- -- --
528.61 1.07 8.67 -1.93 -- 3.31 -- -- -1.45 -- 76.28 803 8.29 19.4
576.78 1.12 8.57 -- 1.92 3.73 -- -- -1.1 5.3 74.57 1122 2.38 19.5
834.53 1.35 8.69 -2.14 -- -- -- -- -1.57 -- -- -- -- --
832.9 1.35 8.61 -- 1.54 -- -- -- -1.36 6.02 -- -- -- --
617.61 1.16 8.66 -- -- 3.57 -- -- -1.22 -- 75.43 830 7.62 19.7
955.69 1.44 8.64 -- -- -- -- -- -1.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 483.40 humidity 90 720 < th dose dependent rect. 16 18
3 484.02 humidity 70 720 > th dose dependent rect. 5 18
4 484.12 humidity 80 720 > th dose independent rect. 4 18
5 484.36 humidity 70 720 > th dose dependent rect. 4 20
28 492.61 humidity 80 720 > th dose independent rect. 8 21
29 492.63 humidity 70 720 > th dose dependent rect. 7 20
49 495.58 humidity 70 1440 > th dose independent rect. 18 20
69 498.54 humidity 80 1440 < th dose dependent sin 9 NA
78 499.73 humidity 70 1440 < th dose independent rect. 18 20
86 500.62 humidity 60 1440 > th dose dependent rect. 18 21
92 500.98 humidity 60 720 > th dose dependent sin 14 NA
114 501.76 humidity 90 720 < th dose dependent sin 12 NA
124 502.25 humidity 80 1440 < th dose independent rect. 6 16
133 502.82 humidity 80 1440 < th dose independent rect. 6 19
145 503.14 humidity 80 1440 < th dose independent sin 3 NA
157 503.49 humidity 80 1440 < th dose independent rect. 1 20
212 504.46 humidity 60 1440 > th dose dependent rect. 13 23
309 506.12 humidity 60 1440 > th dose dependent no NA NA
324 506.28 humidity 80 1440 > th dose independent sin 3 NA
328 506.31 humidity 60 1440 > th dose dependent rect. 22 23
331 506.37 humidity 80 1440 > th dose independent rect. 13 23
347 506.70 humidity 80 1440 < th dose independent rect. 13 23
393 507.31 humidity 80 1440 < th dose independent rect. 6 9
432 507.75 humidity 80 1440 < th dose independent rect. 15 23
441 507.84 humidity 70 1440 > th dose independent rect. 9 4
443 507.85 humidity 80 1440 > th dose independent rect. 15 23
460 508.18 humidity 60 1440 > th dose dependent rect. 9 23
466 508.29 humidity 80 1440 > th dose independent no NA NA
478 508.45 humidity 80 1440 < th dose independent no NA NA
501 508.83 humidity 80 1440 > th dose independent rect. 11 23
519 509.10 humidity 80 1440 > th dose independent rect. 21 23
533 509.28 humidity 80 1440 < th dose independent rect. 11 23
534 509.31 humidity 70 1440 < th dose independent rect. 9 4
565 509.80 humidity 80 720 < th dose independent rect. 15 19
607 510.33 humidity 80 1440 < th dose independent rect. 6 4
611 510.41 humidity 60 720 > th dose dependent rect. 15 14
622 510.56 humidity 80 1440 > th dose independent rect. 6 9
645 510.96 humidity 80 720 > th dose independent sin 15 NA
651 511.10 humidity 60 1440 > th dose dependent sin 3 NA
665 511.33 humidity 70 1440 > th dose independent sin 8 NA
712 511.86 humidity 70 720 > th dose dependent sin 22 NA
747 512.24 humidity 90 1440 < th dose dependent no NA NA
778 512.66 humidity 90 1440 < th dose dependent rect. 5 23
784 512.72 humidity 60 1440 > th dose dependent rect. 5 10
786 512.73 humidity 90 1440 < th dose dependent rect. 2 23
827 513.10 humidity 80 720 > th dose independent rect. 13 16
855 513.35 humidity 90 720 < th dose dependent rect. 16 12
887 513.64 humidity 90 1440 < th dose dependent rect. 22 23
981 514.57 humidity 80 720 > th dose independent sin 22 NA