BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0297600 Os03g0297600|AK108414
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0297600 Streptomyces cyclase/dehydrase family protein 282 1e-76
Os05g0473000 Streptomyces cyclase/dehydrase family protein 177 7e-45
Os01g0827800 175 3e-44
Os06g0562200 Bet v I allergen family protein 132 2e-31
Os02g0226801 Bet v I allergen family protein 131 4e-31
Os05g0213500 Conserved hypothetical protein 129 2e-30
Os02g0255500 Similar to Extensin (Fragment) 125 3e-29
Os06g0528300 Conserved hypothetical protein 123 1e-28
Os06g0527800 Conserved hypothetical protein 121 4e-28
Os10g0573400 Conserved hypothetical protein 117 6e-27
Os02g0255300 113 1e-25
>Os03g0297600 Streptomyces cyclase/dehydrase family protein
Length = 229
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 148/212 (69%)
Query: 1 MPCIPASSPGIPXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDGEVPMEVA 60
MPCIPASSPGIP R HDGEVPMEVA
Sbjct: 1 MPCIPASSPGIPHQHQHQHHRALAGVGMAVGCAAEAAVAAAGVAGTRCGAHDGEVPMEVA 60
Query: 61 RHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAGDGGVGTL 120
RHHEHAEPGSGRCCS RRFDQPQAYKRFVRSCALLAGDGGVGTL
Sbjct: 61 RHHEHAEPGSGRCCSAVVQHVAAPAAAVWSVVRRFDQPQAYKRFVRSCALLAGDGGVGTL 120
Query: 121 REVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAATX 180
REVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAAT
Sbjct: 121 REVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAATV 180
Query: 181 XXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
PPGNTPEDTRVFVDTIVKCNLQS
Sbjct: 181 VVESYVVDVPPGNTPEDTRVFVDTIVKCNLQS 212
>Os05g0473000 Streptomyces cyclase/dehydrase family protein
Length = 216
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/163 (61%), Positives = 111/163 (68%), Gaps = 7/163 (4%)
Query: 55 VPMEVARHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAGD 114
VP EVARHHEHA G G+CCS RRFD+PQAYK F+RSC LL GD
Sbjct: 40 VPAEVARHHEHA-AGVGQCCSAVVQAIAAPVDAVWSVVRRFDRPQAYKHFIRSCRLLDGD 98
Query: 115 G-----GVGTLREVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVH 169
G VG++REVRVVSGLPA SSRERLEILDDE VLSFRVVGGEHRL NY SVTTVH
Sbjct: 99 GDGGAVAVGSVREVRVVSGLPATSSRERLEILDDERRVLSFRVVGGEHRLSNYRSVTTVH 158
Query: 170 PSPSAPTAATXXXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
+ +A AA P GNT ++TR+FVDTIV+CNLQS
Sbjct: 159 ET-AAGAAAAVVVESYVVDVPHGNTADETRMFVDTIVRCNLQS 200
>Os01g0827800
Length = 208
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/159 (59%), Positives = 112/159 (70%), Gaps = 4/159 (2%)
Query: 55 VPMEVARHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAGD 114
VP EVAR+HEHA G+G+C S RRFD+PQAYK+F++SC L+ GD
Sbjct: 31 VPCEVARYHEHAV-GAGQCFSTVVQAIAAPADAVWSVVRRFDRPQAYKKFIKSCRLVDGD 89
Query: 115 GG-VGTLREVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPS 173
GG VG++REVRVVSGLPA SSRERLE+LDD+ VLSFR+VGGEHRL NY SVTTVH + +
Sbjct: 90 GGEVGSVREVRVVSGLPATSSRERLEVLDDDRRVLSFRIVGGEHRLANYRSVTTVHEAAA 149
Query: 174 APTAATXXXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
A PPGNT E+TRVFVDTIV+CNLQS
Sbjct: 150 --PAMAVVVESYVVDVPPGNTWEETRVFVDTIVRCNLQS 186
>Os06g0562200 Bet v I allergen family protein
Length = 207
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 83/126 (65%), Gaps = 7/126 (5%)
Query: 93 RRFDQPQAYKRFVRSCALLAGDGG-VGTLREVRVVSGLPAASSRERLEILDDESHVLSFR 151
R F PQ YK FVR+CAL AGDG VG++REV VVSGLPA++S ERLE+LDD+ H++SFR
Sbjct: 65 RSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHIISFR 124
Query: 152 VVGGEHRLKNYLSVTTVHPSPSAPTAATXXXXX------XXXXXPPGNTPEDTRVFVDTI 205
VVGG+HRL+NY SVT+V P GNT EDTR+F DT+
Sbjct: 125 VVGGQHRLRNYRSVTSVTEFQPPAAGPGPAPPYCVVVESYVVDVPDGNTAEDTRMFTDTV 184
Query: 206 VKCNLQ 211
VK NLQ
Sbjct: 185 VKLNLQ 190
>Os02g0226801 Bet v I allergen family protein
Length = 207
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 84/123 (68%), Gaps = 4/123 (3%)
Query: 93 RRFDQPQAYKRFVRSCALLAGDGG-VGTLREVRVVSGLPAASSRERLEILDDESHVLSFR 151
R F PQ YK F++SC L AGDG VG++REV VVSGLPA++S ERLEILDD+ HVLSFR
Sbjct: 67 RGFANPQRYKHFIKSCELAAGDGATVGSVREVAVVSGLPASTSTERLEILDDDRHVLSFR 126
Query: 152 VVGGEHRLKNYLSVTTVHPSPSAPTAATXX---XXXXXXXXPPGNTPEDTRVFVDTIVKC 208
VVGG+HRL+NY SVT+V S + P GNT EDTR+F DT+VK
Sbjct: 127 VVGGDHRLRNYRSVTSVTEFSSPSSPPRPYCVVVESYVVDVPEGNTEEDTRMFTDTVVKL 186
Query: 209 NLQ 211
NLQ
Sbjct: 187 NLQ 189
>Os05g0213500 Conserved hypothetical protein
Length = 209
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 61 RHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAGDGGVGTL 120
R H HA PG +C S R FDQPQ YK FV C + GD +G++
Sbjct: 40 RLHSHA-PGEHQCSSALVKHIKAPVHLVWSLVRSFDQPQRYKPFVSRCVVRGGDLEIGSV 98
Query: 121 REVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAATX 180
REV V +GLPA +S ERLE+LDD+ H+LS + VGG+HRL+NY S+ TVHP T
Sbjct: 99 REVNVKTGLPATTSTERLELLDDDEHILSVKFVGGDHRLRNYSSIVTVHPESIDGRPGTL 158
Query: 181 XXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
P GNT ++T FV+ ++KCNL S
Sbjct: 159 VIESFVVDVPDGNTKDETCYFVEAVIKCNLTS 190
>Os02g0255500 Similar to Extensin (Fragment)
Length = 204
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 59 VARHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAGDGGVG 118
V R H H EP +C S RRFDQPQ +K FV C + G+ +G
Sbjct: 34 VRRFHRH-EPRDHQCSSAVAKHIKAPVHLVWSLVRRFDQPQLFKPFVSRCEM-KGNIEIG 91
Query: 119 TLREVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAA 178
++REV V SGLPA S ERLE+LDD H+LS R VGG+HRLKNY S+ TVHP
Sbjct: 92 SVREVNVKSGLPATRSTERLELLDDNEHILSVRFVGGDHRLKNYSSILTVHPEVIDGRPG 151
Query: 179 TXXXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
T P GNT ++T FV+ ++KCNL+S
Sbjct: 152 TLVIESFVVDVPEGNTKDETCYFVEALLKCNLKS 185
>Os06g0528300 Conserved hypothetical protein
Length = 206
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 80/159 (50%)
Query: 54 EVPMEVARHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAG 113
E ME R EP S +C S RRFDQPQ +K FVR+C +
Sbjct: 36 EEEMEYIRRFHRHEPSSNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMREN 95
Query: 114 DGGVGTLREVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPS 173
G +REV V SGLPA S ERLE+LDD H+L +GG+H LKNY S+ TVH
Sbjct: 96 IIATGCIREVNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVI 155
Query: 174 APTAATXXXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
T P GNT +D F++ +++CNL++
Sbjct: 156 DGQLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLRT 194
>Os06g0527800 Conserved hypothetical protein
Length = 206
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 79/159 (49%)
Query: 54 EVPMEVARHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAG 113
E ME R EP S +C S RRFDQPQ +K FVR C +
Sbjct: 36 EEEMEYIRQFHRHEPSSNQCTSFVAKHIKAPLQTVWSLVRRFDQPQLFKPFVRKCVMREN 95
Query: 114 DGGVGTLREVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPS 173
G +REV V SGLPA S ERLE+LDD H+L + +GG+H LKNY S+ T+H
Sbjct: 96 IIVTGCVREVNVQSGLPATRSTERLELLDDNEHILKVKFIGGDHMLKNYSSILTIHSEVI 155
Query: 174 APTAATXXXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
T P GNT +D F++ +++CNL +
Sbjct: 156 DGQLGTLVVESFVVDIPDGNTKDDICYFIENVLRCNLMT 194
>Os10g0573400 Conserved hypothetical protein
Length = 212
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 53 GEVPMEVARHHEHAEPGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALL- 111
+V V HH +A G G+C S RRFD PQ YK F+RSC L
Sbjct: 22 AQVRATVEAHHRYA-VGPGQCSSLLAQRIHAPPAAVWAVVRRFDCPQVYKHFIRSCVLRP 80
Query: 112 -------AGDGGVGTLREVRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLS 164
D G LREV V+SGLPA++S ERL++LDD V F + GGEHRL+NY S
Sbjct: 81 DPHHDDNGNDLRPGRLREVSVISGLPASTSTERLDLLDDAHRVFGFTITGGEHRLRNYRS 140
Query: 165 VTTVHPSPSAPTAATXXXXXXXXXXPPGNTPEDTRVFVDTIVKCNLQS 212
VTTV T P GNT +DTR+F DT+++ NLQ
Sbjct: 141 VTTV---SQLDEICTLVLESYIVDVPDGNTEDDTRLFADTVIRLNLQK 185
>Os02g0255300
Length = 177
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 68 PGSGRCCSXXXXXXXXXXXXXXXXXRRFDQPQAYKRFVRSCALLAGDG-GVGTLREVRVV 126
P SG+C S RRF++P ++ FVR C + VG +REV
Sbjct: 11 PPSGQCSSAVTMRINAPVHLVWSIVRRFEEPHIFQPFVRGCTMRGSTSLAVGCVREVDFK 70
Query: 127 SGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAATXXXXXXX 186
SG PA SS ERLEILDD+ HV R++GG+HRLKNY SV T P AT
Sbjct: 71 SGFPAKSSVERLEILDDKEHVFGVRIIGGDHRLKNYSSVLTAKPEVIDGEPATLVSESFV 130
Query: 187 XXXPPGNTPEDTRVFVDTIVKCNLQS 212
P GNT ++TR FV+ +++CNL+S
Sbjct: 131 VDVPEGNTADETRHFVEFLIRCNLRS 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,055,540
Number of extensions: 206594
Number of successful extensions: 518
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 11
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)