Os06g0562200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bet v I allergen family protein.
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Os06g0562200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bet v I allergen family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.16 | 0.41 | 13.9 | -1.4 | 1.54 | 1.07 | 0.688 | -1.25 | -0.839 | 19.9 | 26.5 | 719 | -- | -- |
| 77.4 | 0.41 | 13.9 | -1.15 | 1.48 | 1.04 | 0.256 | -- | -0.77 | 20 | 26.6 | 685 | -- | -- |
| 77.31 | 0.41 | 13.9 | -1.35 | 1.54 | 1.07 | -- | -0.876 | -0.82 | 19.9 | 26.6 | 718 | -- | -- |
| 77.56 | 0.41 | 13.9 | -1.11 | 1.5 | 1.01 | -- | -- | -0.741 | 20 | 26.5 | 659 | -- | -- |
| 159.66 | 0.589 | 13.9 | -1.34 | -- | 1.89 | -- | -0.748 | -0.877 | -- | 26.6 | 631 | -- | -- |
| 107.1 | 0.485 | 13.8 | -0.808 | 2.06 | -- | 0.599 | -- | -0.524 | 20 | -- | -- | -- | -- |
| 108.16 | 0.487 | 13.8 | -0.825 | 2.06 | -- | -- | -- | -0.523 | 20 | -- | -- | -- | -- |
| 158.02 | 0.585 | 13.9 | -1.41 | -- | 1.94 | -- | -- | -0.978 | -- | 26.59 | 610 | -- | -- |
| 106.81 | 0.481 | 13.8 | -- | 1.57 | 0.868 | -- | -- | -0.562 | 20.3 | 27.6 | 564 | -- | -- |
| 340.4 | 0.862 | 13.8 | -0.846 | -- | -- | -- | -- | -0.55 | -- | -- | -- | -- | -- |
| 126.09 | 0.525 | 13.8 | -- | 2.07 | -- | -- | -- | -0.431 | 19.9 | -- | -- | -- | -- |
| 208.15 | 0.672 | 13.8 | -- | -- | 1.9 | -- | -- | -0.67 | -- | 27.5 | 608 | -- | -- |
| 359.28 | 0.885 | 13.8 | -- | -- | -- | -- | -- | -0.456 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 2 | 75.26 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 6 | 75.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 18 | 76.37 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 19 | 76.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 25 | 76.55 | temperature | 20 | 720 | > th | dose dependent | sin | 22 | NA |
| 40 | 76.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 62 | 77.22 | temperature | 15 | 270 | > th | dose dependent | sin | 17 | NA |
| 70 | 77.36 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 18 |
| 81 | 77.52 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 16 |
| 226 | 78.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 228 | 78.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 22 |
| 229 | 78.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 232 | 78.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 241 | 78.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 257 | 78.68 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 264 | 78.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 293 | 78.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 306 | 78.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 383 | 79.03 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 411 | 79.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 15 |
| 584 | 79.74 | temperature | 25 | 720 | < th | dose independent | sin | 22 | NA |
| 597 | 79.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 602 | 79.82 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 9 |
| 678 | 80.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 688 | 80.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 17 |
| 704 | 80.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 711 | 80.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 714 | 80.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 18 |
| 795 | 80.17 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 884 | 80.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 933 | 80.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 12 |
| 938 | 80.33 | temperature | 15 | 1440 | > th | dose dependent | sin | 7 | NA |
| 971 | 80.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 12 |