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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0527800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0197) R2 : 0.306
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.76 (0.265) R2dE : 0.306 R2E : 0.305
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0266 (0.0414) R2dN8 : 0.000809 R2N8 : 0.00016
σ : 0.37
deviance : 62.98
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.67
memory length : 8
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22
open length of G : 1.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.57 0.372 2.89 0.153 0.0644 2.91 0.236 6.19 0.0376 1.86 25.55 10 21.2 2.6
62.17 0.37 2.89 0.118 0.0703 3.69 0.237 -- 0.0451 1.63 25.67 9 21.2 2.4
62.37 0.371 2.89 0.112 0.0782 3.64 -- 0.499 0.0447 3.05 25.68 10 21.4 2.39
62.35 0.37 2.89 0.11 0.0778 3.71 -- -- 0.0433 3.1 25.67 9 21.2 2.4
62.68 0.371 2.89 0.116 -- 3.64 -- 0.631 0.0448 -- 25.66 9 21.8 2.07
88.88 0.442 2.9 0.153 0.111 -- 0.359 -- 0.0326 23.8 -- -- -- --
89.41 0.443 2.9 0.138 0.112 -- -- -- 0.0305 0.566 -- -- -- --
62.67 0.37 2.89 0.113 -- 3.72 -- -- 0.0436 -- 25.66 9 21.8 2.05
62.66 0.371 2.9 -- 0.0798 3.72 -- -- 0.0308 3.13 25.67 9 21.3 2.58
90.19 0.444 2.9 0.142 -- -- -- -- 0.0324 -- -- -- -- --
89.92 0.444 2.9 -- 0.114 -- -- -- 0.0151 0.626 -- -- -- --
62.98 0.37 2.9 -- -- 3.76 -- -- 0.0266 -- 25.67 8 22 1.85
90.73 0.445 2.9 -- -- -- -- -- 0.0167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.17 temperature 25.0 10 > th dose dependent rect. 21 2
18 72.88 temperature 25.0 30 > th dose dependent rect. 21 10
41 75.60 atmosphere 1000.0 10 < th dose independent rect. 21 1
48 75.60 atmosphere 1000.0 10 < th dose dependent rect. 21 1
83 77.11 humidity 80.0 90 < th dose independent rect. 20 1
88 78.08 humidity 80.0 90 < th dose dependent rect. 20 1
92 78.64 temperature 25.0 30 > th dose independent rect. 21 1
110 79.74 wind 3.0 90 > th dose independent rect. 21 1
115 79.99 humidity 90.0 10 < th dose dependent rect. 21 2
148 80.80 humidity 90.0 10 < th dose independent rect. 21 1
171 81.51 atmosphere 1000.0 270 < th dose dependent rect. 18 4
184 81.73 wind 3.0 90 > th dose dependent rect. 21 1
235 82.57 humidity 60.0 270 < th dose independent rect. 18 1
240 82.59 humidity 60.0 270 < th dose dependent rect. 18 1
351 83.52 temperature 25.0 90 > th dose independent rect. 20 11
375 83.75 atmosphere 1015.0 90 < th dose independent rect. 22 23
432 84.24 atmosphere 1015.0 720 < th dose independent rect. 22 23
438 84.26 temperature 25.0 90 > th dose independent rect. 20 13
538 84.78 atmosphere 1015.0 720 < th dose independent rect. 22 7
543 84.81 atmosphere 1015.0 720 < th dose independent rect. 17 17
566 84.91 atmosphere 1015.0 30 < th dose independent rect. 7 23
583 84.96 temperature 25.0 30 > th dose dependent rect. 6 1
588 84.98 atmosphere 1015.0 720 < th dose independent rect. 22 15
706 85.10 temperature 10.0 90 > th dose dependent rect. 20 13
719 85.14 atmosphere 1015.0 270 < th dose independent rect. 15 13
736 85.21 humidity 60.0 720 > th dose independent rect. 16 1
744 85.23 atmosphere 1010.0 30 < th dose independent rect. 6 1
750 85.26 atmosphere 995.0 1440 > th dose independent rect. 10 23
756 85.28 atmosphere 1015.0 720 < th dose independent rect. 8 17
759 85.29 radiation 10.0 30 < th dose independent rect. 6 1
778 85.34 atmosphere 995.0 720 > th dose independent rect. 23 20
781 85.35 humidity 60.0 720 > th dose independent rect. 15 4
787 85.36 atmosphere 1015.0 10 < th dose independent rect. 9 23
809 85.43 atmosphere 995.0 720 > th dose independent rect. 8 11
810 85.43 atmosphere 995.0 720 > th dose independent rect. 7 13
820 85.46 atmosphere 1015.0 720 < th dose independent rect. 7 20
824 85.47 atmosphere 995.0 720 < th dose independent sin 8 NA
842 85.49 atmosphere 995.0 1440 > th dose independent rect. 10 10
843 85.49 atmosphere 995.0 1440 > th dose independent rect. 10 12
847 85.50 atmosphere 1015.0 720 < th dose independent rect. 16 9
858 85.52 atmosphere 1015.0 720 < th dose independent rect. 22 13
864 85.54 atmosphere 995.0 720 > th dose independent rect. 15 20
872 85.56 atmosphere 995.0 1440 > th dose independent sin 11 NA
873 85.56 atmosphere 1015.0 720 < th dose independent rect. 13 22
875 85.57 atmosphere 995.0 270 > th dose independent sin 8 NA
931 85.59 humidity 60.0 720 > th dose independent rect. 15 13
932 85.59 atmosphere 1015.0 10 < th dose independent rect. 16 14
933 85.59 atmosphere 1015.0 720 < th dose independent rect. 7 22
938 85.60 precipitation 0.1 90 < th dose independent rect. 21 2
942 85.60 precipitation 0.1 90 < th dose dependent rect. 21 2
961 85.61 atmosphere 995.0 720 > th dose independent rect. 17 17
965 85.62 atmosphere 995.0 720 > th dose independent rect. 14 6
977 85.64 humidity 50.0 720 < th dose independent rect. 16 1
978 85.64 atmosphere 995.0 720 < th dose dependent sin 8 NA
993 85.66 atmosphere 995.0 720 > th dose independent rect. 15 4
996 85.66 atmosphere 995.0 720 > th dose independent rect. 8 18