Os05g0473000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Streptomyces cyclase/dehydrase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0473000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Streptomyces cyclase/dehydrase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 851.79 | 1.37 | 4.1 | -1.62 | 0.838 | 5.66 | -1.87 | -8.4 | -0.662 | 1.84 | 92.01 | 753 | 19.9 | 0.816 |
| 884.8 | 1.39 | 4.09 | -1.67 | 0.829 | 5.54 | -2.11 | -- | -0.651 | 2.13 | 92.01 | 683 | 20 | 1 |
| 840.11 | 1.35 | 4.1 | -1.54 | 0.781 | 6.11 | -- | -8.3 | -0.673 | 1.64 | 92.25 | 687 | 20.1 | 0.691 |
| 904.9 | 1.4 | 4.06 | -1.58 | 0.791 | 5.61 | -- | -- | -0.632 | 1.82 | 92.38 | 681 | 20.1 | 0.9 |
| 874.76 | 1.38 | 4.09 | -1.5 | -- | 6.62 | -- | -9.47 | -0.709 | -- | 92.28 | 687 | 20.1 | 0.656 |
| 1131.07 | 1.58 | 4.13 | -1.66 | 1.19 | -- | -2.4 | -- | -0.882 | 2.17 | -- | -- | -- | -- |
| 1152.43 | 1.59 | 4.12 | -1.59 | 1.18 | -- | -- | -- | -0.867 | 1.94 | -- | -- | -- | -- |
| 938.82 | 1.43 | 4.06 | -1.59 | -- | 5.88 | -- | -- | -0.633 | -- | 92.21 | 677 | 20.1 | 0.883 |
| 938.57 | 1.43 | 3.97 | -- | 0.916 | 5.6 | -- | -- | -0.436 | 2.71 | 92.95 | 707 | 20.1 | 0.129 |
| 1237.04 | 1.64 | 4.11 | -1.54 | -- | -- | -- | -- | -0.839 | -- | -- | -- | -- | -- |
| 1218.88 | 1.63 | 4.08 | -- | 1.15 | -- | -- | -- | -0.69 | 1.9 | -- | -- | -- | -- |
| 971.84 | 1.45 | 3.98 | -- | -- | 5.76 | -- | -- | -0.417 | -- | 92.88 | 707 | 20.1 | 0.15 |
| 1299.5 | 1.68 | 4.07 | -- | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 914.23 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 3 | 915.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 6 | 916.95 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 10 | 924.47 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 12 | 925.19 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 14 | 925.63 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 15 | 927.47 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 16 | 928.15 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 17 | 928.71 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 22 | 930.58 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 24 | 930.62 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 25 | 930.63 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 29 | 930.71 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 37 | 932.08 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 45 | 932.93 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 47 | 932.96 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 48 | 932.99 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 63 | 934.82 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 105 | 936.92 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 212 | 941.09 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 221 | 941.40 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 233 | 941.96 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 236 | 942.18 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 253 | 942.74 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 259 | 942.90 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 260 | 942.91 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 262 | 942.95 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 268 | 942.98 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 272 | 943.09 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 284 | 943.25 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 298 | 943.90 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 324 | 944.31 | radiation | 10.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 327 | 944.40 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 336 | 944.64 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 389 | 945.58 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 419 | 945.84 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 450 | 946.70 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 499 | 947.37 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 572 | 947.58 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 676 | 949.35 | radiation | 20.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 739 | 950.77 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 878 | 953.26 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 936 | 954.12 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 5 |