Os05g0213500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0213500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.65 | 0.197 | 13.7 | 0.531 | 0.941 | 0.305 | 0.432 | -0.127 | 0.257 | 16.6 | 71 | 1234 | -- | -- |
| 17.69 | 0.196 | 13.7 | 0.51 | 0.942 | 0.298 | 0.42 | -- | 0.254 | 16.6 | 70.96 | 1231 | -- | -- |
| 18.13 | 0.198 | 13.7 | 0.523 | 0.944 | 0.298 | -- | -0.0596 | 0.257 | 16.5 | 70.73 | 1240 | -- | -- |
| 18.14 | 0.198 | 13.7 | 0.514 | 0.944 | 0.295 | -- | -- | 0.254 | 16.5 | 70.62 | 1240 | -- | -- |
| 60.43 | 0.364 | 13.7 | 0.394 | -- | -0.379 | -- | -0.154 | 0.209 | -- | 70.49 | 1231 | -- | -- |
| 20.84 | 0.214 | 13.8 | 0.444 | 0.984 | -- | 0.406 | -- | 0.211 | 16.4 | -- | -- | -- | -- |
| 21.28 | 0.216 | 13.8 | 0.448 | 0.986 | -- | -- | -- | 0.214 | 16.3 | -- | -- | -- | -- |
| 60.55 | 0.364 | 13.7 | 0.39 | -- | -0.381 | -- | -- | 0.209 | -- | 70.49 | 1231 | -- | -- |
| 20.35 | 0.21 | 13.7 | -- | 0.975 | 0.53 | -- | -- | 0.236 | 16.4 | 64.99 | 30924 | -- | -- |
| 73.6 | 0.401 | 13.8 | 0.409 | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
| 26.57 | 0.241 | 13.8 | -- | 0.977 | -- | -- | -- | 0.164 | 16.3 | -- | -- | -- | -- |
| 62.97 | 0.371 | 13.8 | -- | -- | -0.401 | -- | -- | 0.175 | -- | 71.29 | 1209 | -- | -- |
| 78 | 0.412 | 13.8 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.12 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 6 | 17.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 17.74 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 10 | 17.75 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 17 | 17.79 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 2 |
| 20 | 17.83 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 22 | 17.84 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 34 | 17.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 35 | 17.91 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 48 | 17.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 49 | 17.97 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 50 | 17.98 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 56 | 17.99 | humidity | 70 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 61 | 18.00 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 7 |
| 70 | 18.01 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 5 |
| 87 | 18.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 88 | 18.03 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 93 | 18.04 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 137 | 18.08 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 146 | 18.09 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 163 | 18.11 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 1 |
| 186 | 18.12 | radiation | 10 | 1440 | < th | dose dependent | sin | 11 | NA |
| 193 | 18.12 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 20 |
| 242 | 18.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 245 | 18.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 258 | 18.14 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 261 | 18.14 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 289 | 18.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 303 | 18.16 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 344 | 18.17 | radiation | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 373 | 18.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 379 | 18.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 20 |
| 398 | 18.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 19 |
| 402 | 18.18 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 403 | 18.18 | radiation | 10 | 1440 | > th | dose independent | sin | 11 | NA |
| 489 | 18.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 518 | 18.20 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 592 | 18.20 | radiation | 1 | 1440 | > th | dose dependent | sin | 11 | NA |
| 668 | 18.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 692 | 18.22 | radiation | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 702 | 18.22 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 734 | 18.23 | radiation | 20 | 1440 | > th | dose independent | no | NA | NA |
| 741 | 18.23 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 890 | 18.24 | humidity | 70 | 1440 | > th | dose independent | sin | 23 | NA |
| 906 | 18.24 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 978 | 18.25 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 991 | 18.26 | humidity | 70 | 1440 | < th | dose independent | sin | 21 | NA |