BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0528300 Os06g0528300|Os06g0528300
(206 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0528300 Conserved hypothetical protein 365 e-101
Os06g0527800 Conserved hypothetical protein 343 5e-95
Os02g0255500 Similar to Extensin (Fragment) 258 3e-69
Os05g0213500 Conserved hypothetical protein 227 4e-60
Os02g0255300 199 2e-51
Os03g0297600 Streptomyces cyclase/dehydrase family protein 151 3e-37
Os10g0573400 Conserved hypothetical protein 149 1e-36
Os05g0473000 Streptomyces cyclase/dehydrase family protein 138 3e-33
Os06g0526466 Hypothetical protein 135 2e-32
Os01g0827800 128 3e-30
Os02g0226801 Bet v I allergen family protein 120 8e-28
Os06g0562200 Bet v I allergen family protein 112 2e-25
Os06g0528150 108 2e-24
>Os06g0528300 Conserved hypothetical protein
Length = 206
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/193 (92%), Positives = 178/193 (92%)
Query: 14 KLPMVSHRRVQWRLADXXXXXXXXXXXXXXXFHRHEPSSNQCTSFAAKHIKAPLHTVWSL 73
KLPMVSHRRVQWRLAD FHRHEPSSNQCTSFAAKHIKAPLHTVWSL
Sbjct: 14 KLPMVSHRRVQWRLADERCELREEEMEYIRRFHRHEPSSNQCTSFAAKHIKAPLHTVWSL 73
Query: 74 VRRFDQPQLFKPFVRNCVMRENIIATGCIREVNVQSGLPATRSTERLELLDDNEHILKVN 133
VRRFDQPQLFKPFVRNCVMRENIIATGCIREVNVQSGLPATRSTERLELLDDNEHILKVN
Sbjct: 74 VRRFDQPQLFKPFVRNCVMRENIIATGCIREVNVQSGLPATRSTERLELLDDNEHILKVN 133
Query: 134 FIGGDHMLKNYSSILTVHSEVIDGQLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLR 193
FIGGDHMLKNYSSILTVHSEVIDGQLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLR
Sbjct: 134 FIGGDHMLKNYSSILTVHSEVIDGQLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLR 193
Query: 194 TLADVSEERLANP 206
TLADVSEERLANP
Sbjct: 194 TLADVSEERLANP 206
>Os06g0527800 Conserved hypothetical protein
Length = 206
Score = 343 bits (880), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 165/193 (85%), Positives = 170/193 (88%)
Query: 14 KLPMVSHRRVQWRLADXXXXXXXXXXXXXXXFHRHEPSSNQCTSFAAKHIKAPLHTVWSL 73
KLPMVSHRRVQ RLAD FHRHEPSSNQCTSF AKHIKAPL TVWSL
Sbjct: 14 KLPMVSHRRVQCRLADKRCELREEEMEYIRQFHRHEPSSNQCTSFVAKHIKAPLQTVWSL 73
Query: 74 VRRFDQPQLFKPFVRNCVMRENIIATGCIREVNVQSGLPATRSTERLELLDDNEHILKVN 133
VRRFDQPQLFKPFVR CVMRENII TGC+REVNVQSGLPATRSTERLELLDDNEHILKV
Sbjct: 74 VRRFDQPQLFKPFVRKCVMRENIIVTGCVREVNVQSGLPATRSTERLELLDDNEHILKVK 133
Query: 134 FIGGDHMLKNYSSILTVHSEVIDGQLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLR 193
FIGGDHMLKNYSSILT+HSEVIDGQLGTLVVESF+VD+P+GNTKDDI YFIENVLRCNL
Sbjct: 134 FIGGDHMLKNYSSILTIHSEVIDGQLGTLVVESFVVDIPDGNTKDDICYFIENVLRCNLM 193
Query: 194 TLADVSEERLANP 206
TLADVSEERLANP
Sbjct: 194 TLADVSEERLANP 206
>Os02g0255500 Similar to Extensin (Fragment)
Length = 204
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/177 (69%), Positives = 141/177 (79%), Gaps = 1/177 (0%)
Query: 24 QWRLADXXXXXXXXXXXXXXXFHRHEPSSNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLF 83
+WRLAD FHRHEP +QC+S AKHIKAP+H VWSLVRRFDQPQLF
Sbjct: 16 RWRLADERCDLRAAETEYVRRFHRHEPRDHQCSSAVAKHIKAPVHLVWSLVRRFDQPQLF 75
Query: 84 KPFVRNCVMRENIIATGCIREVNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKN 143
KPFV C M+ NI G +REVNV+SGLPATRSTERLELLDDNEHIL V F+GGDH LKN
Sbjct: 76 KPFVSRCEMKGNI-EIGSVREVNVKSGLPATRSTERLELLDDNEHILSVRFVGGDHRLKN 134
Query: 144 YSSILTVHSEVIDGQLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLRTLADVSE 200
YSSILTVH EVIDG+ GTLV+ESF+VDVPEGNTKD+ YF+E +L+CNL++LA+VSE
Sbjct: 135 YSSILTVHPEVIDGRPGTLVIESFVVDVPEGNTKDETCYFVEALLKCNLKSLAEVSE 191
>Os05g0213500 Conserved hypothetical protein
Length = 209
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 106/160 (66%), Positives = 129/160 (80%), Gaps = 1/160 (0%)
Query: 45 FHRHEPSSNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRENIIATGCIRE 104
H H P +QC+S KHIKAP+H VWSLVR FDQPQ +KPFV CV+R + G +RE
Sbjct: 41 LHSHAPGEHQCSSALVKHIKAPVHLVWSLVRSFDQPQRYKPFVSRCVVRGGDLEIGSVRE 100
Query: 105 VNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDGQLGTLVV 164
VNV++GLPAT STERLELLDD+EHIL V F+GGDH L+NYSSI+TVH E IDG+ GTLV+
Sbjct: 101 VNVKTGLPATTSTERLELLDDDEHILSVKFVGGDHRLRNYSSIVTVHPESIDGRPGTLVI 160
Query: 165 ESFIVDVPEGNTKDDISYFIENVLRCNLRTLADVSEERLA 204
ESF+VDVP+GNTKD+ YF+E V++CNL +LA+VS ERLA
Sbjct: 161 ESFVVDVPDGNTKDETCYFVEAVIKCNLTSLAEVS-ERLA 199
>Os02g0255300
Length = 177
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 118/160 (73%), Gaps = 3/160 (1%)
Query: 47 RHEPS--SNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRENI-IATGCIR 103
R EPS S QC+S I AP+H VWS+VRRF++P +F+PFVR C MR + +A GC+R
Sbjct: 6 RPEPSPPSGQCSSAVTMRINAPVHLVWSIVRRFEEPHIFQPFVRGCTMRGSTSLAVGCVR 65
Query: 104 EVNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDGQLGTLV 163
EV+ +SG PA S ERLE+LDD EH+ V IGGDH LKNYSS+LT EVIDG+ TLV
Sbjct: 66 EVDFKSGFPAKSSVERLEILDDKEHVFGVRIIGGDHRLKNYSSVLTAKPEVIDGEPATLV 125
Query: 164 VESFIVDVPEGNTKDDISYFIENVLRCNLRTLADVSEERL 203
ESF+VDVPEGNT D+ +F+E ++RCNLR+LA VS+ L
Sbjct: 126 SESFVVDVPEGNTADETRHFVEFLIRCNLRSLAMVSQRLL 165
>Os03g0297600 Streptomyces cyclase/dehydrase family protein
Length = 229
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Query: 46 HRH-EPSSNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRENIIATGCIRE 104
H H EP S +C S +H+ AP VWS+VRRFDQPQ +K FVR+C + G +RE
Sbjct: 63 HEHAEPGSGRCCSAVVQHVAAPAAAVWSVVRRFDQPQAYKRFVRSCALLAGDGGVGTLRE 122
Query: 105 VNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDGQLGTLVV 164
V V SGLPA S ERLE+LDD H+L +GG+H LKNY S+ TVH T+VV
Sbjct: 123 VRVVSGLPAASSRERLEILDDESHVLSFRVVGGEHRLKNYLSVTTVHPSPSAPTAATVVV 182
Query: 165 ESFIVDVPEGNTKDDISYFIENVLRCNLRTLADVSEERLAN 205
ES++VDVP GNT +D F++ +++CNL++LA +E+ A
Sbjct: 183 ESYVVDVPPGNTPEDTRVFVDTIVKCNLQSLAKTAEKLAAG 223
>Os10g0573400 Conserved hypothetical protein
Length = 212
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 107/163 (65%), Gaps = 11/163 (6%)
Query: 46 HRHEPSSNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRE--------NII 97
HR+ QC+S A+ I AP VW++VRRFD PQ++K F+R+CV+R N +
Sbjct: 32 HRYAVGPGQCSSLLAQRIHAPPAAVWAVVRRFDCPQVYKHFIRSCVLRPDPHHDDNGNDL 91
Query: 98 ATGCIREVNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDG 157
G +REV+V SGLPA+ STERL+LLDD + GG+H L+NY S+ TV +D
Sbjct: 92 RPGRLREVSVISGLPASTSTERLDLLDDAHRVFGFTITGGEHRLRNYRSVTTVSQ--LD- 148
Query: 158 QLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLRTLADVSE 200
++ TLV+ES+IVDVP+GNT+DD F + V+R NL+ L VSE
Sbjct: 149 EICTLVLESYIVDVPDGNTEDDTRLFADTVIRLNLQKLKSVSE 191
>Os05g0473000 Streptomyces cyclase/dehydrase family protein
Length = 216
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 7/167 (4%)
Query: 46 HRHEPSSNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMREN-----IIATG 100
H H QC S + I AP+ VWS+VRRFD+PQ +K F+R+C + + +A G
Sbjct: 48 HEHAAGVGQCCSAVVQAIAAPVDAVWSVVRRFDRPQAYKHFIRSCRLLDGDGDGGAVAVG 107
Query: 101 CIREVNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDGQLG 160
+REV V SGLPAT S ERLE+LDD +L +GG+H L NY S+ TVH E G
Sbjct: 108 SVREVRVVSGLPATSSRERLEILDDERRVLSFRVVGGEHRLSNYRSVTTVH-ETAAGAAA 166
Query: 161 TLVVESFIVDVPEGNTKDDISYFIENVLRCNLRTLADVSEE-RLANP 206
+VVES++VDVP GNT D+ F++ ++RCNL++LA +E+ LA P
Sbjct: 167 AVVVESYVVDVPHGNTADETRMFVDTIVRCNLQSLARTAEQLALAAP 213
>Os06g0526466 Hypothetical protein
Length = 158
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 100/182 (54%), Gaps = 40/182 (21%)
Query: 14 KLPMVSHRRVQWRLADXXXXXXXXXXXXXXXFHRHEPSSNQCTSFAAKHIKAPLHTVWSL 73
+LP VS ++ QW+L D FHR+E + T
Sbjct: 15 RLPAVSLQQAQWKLVDERCELREEEMEYVRWFHRYELVATGAT----------------- 57
Query: 74 VRRFDQPQLFKPFVRNCVMRENIIATGCIREVNVQSGLPATRSTERLELLDDNEHILKVN 133
P + N +GC ++ GLP+TR ERL DDN+H L+V
Sbjct: 58 -----------PSLPN--------TSGCPSKL----GLPSTRRIERLGFPDDNDHTLRVK 94
Query: 134 FIGGDHMLKNYSSILTVHSEVIDGQLGTLVVESFIVDVPEGNTKDDISYFIENVLRCNLR 193
FIGGDHMLK+YSS L +H EVIDGQL TLV+ESF+VD+ EGNTKD+ISYFIEN+L+ NLR
Sbjct: 95 FIGGDHMLKDYSSTLIIHLEVIDGQLVTLVIESFVVDILEGNTKDEISYFIENLLKFNLR 154
Query: 194 TL 195
TL
Sbjct: 155 TL 156
>Os01g0827800
Length = 208
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 103/161 (63%), Gaps = 4/161 (2%)
Query: 45 FHRHEPSSNQCTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRENIIA-TGCIR 103
+H H + QC S + I AP VWS+VRRFD+PQ +K F+++C + + G +R
Sbjct: 38 YHEHAVGAGQCFSTVVQAIAAPADAVWSVVRRFDRPQAYKKFIKSCRLVDGDGGEVGSVR 97
Query: 104 EVNVQSGLPATRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDGQLGTLV 163
EV V SGLPAT S ERLE+LDD+ +L +GG+H L NY S+ TVH +V
Sbjct: 98 EVRVVSGLPATSSRERLEVLDDDRRVLSFRIVGGEHRLANYRSVTTVHEAAA--PAMAVV 155
Query: 164 VESFIVDVPEGNTKDDISYFIENVLRCNLRTLADVSEERLA 204
VES++VDVP GNT ++ F++ ++RCNL++LA + ERLA
Sbjct: 156 VESYVVDVPPGNTWEETRVFVDTIVRCNLQSLAR-TVERLA 195
>Os02g0226801 Bet v I allergen family protein
Length = 207
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 55 CTSFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRENIIAT-GCIREVNVQSGLPA 113
CTS A+ + APL VW +VR F PQ +K F+++C + AT G +REV V SGLPA
Sbjct: 47 CTSLVAQRVDAPLAAVWPIVRGFANPQRYKHFIKSCELAAGDGATVGSVREVAVVSGLPA 106
Query: 114 TRSTERLELLDDNEHILKVNFIGGDHMLKNYSSILTV---HSEVIDGQLGTLVVESFIVD 170
+ STERLE+LDD+ H+L +GGDH L+NY S+ +V S + +VVES++VD
Sbjct: 107 STSTERLEILDDDRHVLSFRVVGGDHRLRNYRSVTSVTEFSSPSSPPRPYCVVVESYVVD 166
Query: 171 VPEGNTKDDISYFIENVLRCNLRTLADVS 199
VPEGNT++D F + V++ NL+ LA V+
Sbjct: 167 VPEGNTEEDTRMFTDTVVKLNLQKLAAVA 195
>Os06g0562200 Bet v I allergen family protein
Length = 207
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 57 SFAAKHIKAPLHTVWSLVRRFDQPQLFKPFVRNCVMRENIIAT-GCIREVNVQSGLPATR 115
S + + AP+ VW +VR F PQ +K FVR C + A+ G +REV V SGLPA+
Sbjct: 47 SLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPAST 106
Query: 116 STERLELLDDNEHILKVNFIGGDHMLKNYSSILTVHSEVIDGQLGTLVVESF-------I 168
STERLE+LDD+ HI+ +GG H L+NY S+ +V +E G + +
Sbjct: 107 STERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSV-TEFQPPAAGPGPAPPYCVVVESYV 165
Query: 169 VDVPEGNTKDDISYFIENVLRCNLRTLADVSEE 201
VDVP+GNT +D F + V++ NL+ LA V+E+
Sbjct: 166 VDVPDGNTAEDTRMFTDTVVKLNLQMLAAVAED 198
>Os06g0528150
Length = 175
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 81/131 (61%), Gaps = 11/131 (8%)
Query: 72 SLVRRFDQPQLFKPFVRNCVMRENIIATGCIREVNVQSGLPATRSTERLELLDDNEHILK 131
SLVRRFDQPQLFKPF+R CVMRENI T +REV VQSG ATRS ERL+ +DDNEHIL+
Sbjct: 35 SLVRRFDQPQLFKPFLRKCVMRENI-DTRSVREVCVQSGFLATRSIERLQFVDDNEHILR 93
Query: 132 VNFIGGDHMLKNYSSILTVHSEVIDGQLGT-----LVVESFIVDVPEGNTKDDIS-YFIE 185
V FIG DHML+ + V +E QL L VE I VP ++ +
Sbjct: 94 VKFIGSDHMLE----LCPVDAEEGAPQLPCTSYLHLFVEDPIGRVPSTKQGHPVAPSYPH 149
Query: 186 NVLRCNLRTLA 196
+ + +R++A
Sbjct: 150 WIWQSRMRSIA 160
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,002,951
Number of extensions: 221431
Number of successful extensions: 441
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 13
Length of query: 206
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 110
Effective length of database: 12,023,257
Effective search space: 1322558270
Effective search space used: 1322558270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)