BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0494700 Os06g0494700|Os06g0494700
(131 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0494700 Conserved hypothetical protein 223 3e-59
Os06g0494400 Multi antimicrobial extrusion protein MatE fam... 102 1e-22
Os06g0495500 Multi antimicrobial extrusion protein MatE fam... 89 9e-19
Os04g0373400 Multi antimicrobial extrusion protein MatE fam... 84 2e-17
Os10g0344900 Multi antimicrobial extrusion protein MatE fam... 82 1e-16
Os10g0344500 78 2e-15
Os10g0345100 Multi antimicrobial extrusion protein MatE fam... 77 5e-15
Os06g0707100 Multi antimicrobial extrusion protein MatE fam... 75 1e-14
>Os06g0494700 Conserved hypothetical protein
Length = 131
Score = 223 bits (567), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 111/131 (84%)
Query: 1 MDTSTTSIASEIGEMKTPPENMVINKASXXXXXXXXXXXXXXXXXXXXLGLREEVKKQLW 60
MDTSTTSIASEIGEMKTPPENMVINKAS LGLREEVKKQLW
Sbjct: 1 MDTSTTSIASEIGEMKTPPENMVINKASAAEEAPVVVAGDEDDDGEAGLGLREEVKKQLW 60
Query: 61 LAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLLETLRDAKHLHR 120
LAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLLETLRDAKHLHR
Sbjct: 61 LAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLLETLRDAKHLHR 120
Query: 121 CFLPSYSNSPN 131
CFLPSYSNSPN
Sbjct: 121 CFLPSYSNSPN 131
>Os06g0494400 Multi antimicrobial extrusion protein MatE family protein
Length = 490
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/65 (80%), Positives = 57/65 (87%)
Query: 51 LREEVKKQLWLAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLLE 110
+REEVKKQLWLA PLVAGALL+ VIQMISVMFVGHLGELPLAGASMA+SF +VTG SLL
Sbjct: 35 VREEVKKQLWLAVPLVAGALLQNVIQMISVMFVGHLGELPLAGASMASSFASVTGLSLLL 94
Query: 111 TLRDA 115
+ A
Sbjct: 95 GMASA 99
>Os06g0495500 Multi antimicrobial extrusion protein MatE family protein
Length = 479
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 50/54 (92%)
Query: 53 EEVKKQLWLAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGF 106
+EVK+QL LAGPL+AG+LL+ +IQMISVMFVGHLGELPLAGASMA+SF VTGF
Sbjct: 26 DEVKRQLRLAGPLIAGSLLQNLIQMISVMFVGHLGELPLAGASMASSFAAVTGF 79
>Os04g0373400 Multi antimicrobial extrusion protein MatE family protein
Length = 269
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 49 LGLREEVKKQLWLAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSL 108
L + EV+KQL+LAGPL+AG LL+ V+QMISVMFVGHLGEL L+ AS+A SF VTGFSL
Sbjct: 27 LAVVAEVRKQLYLAGPLIAGWLLQNVVQMISVMFVGHLGELELSSASIATSFAGVTGFSL 86
Query: 109 L 109
L
Sbjct: 87 L 87
>Os10g0344900 Multi antimicrobial extrusion protein MatE family protein
Length = 477
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 49/62 (79%)
Query: 54 EVKKQLWLAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLLETLR 113
E+K+ L LAGPLVA +LR V+QM+SVMFVGHLGELPLAGAS+A S VTGFSLL +
Sbjct: 28 ELKRLLRLAGPLVASGVLRNVVQMVSVMFVGHLGELPLAGASLATSLANVTGFSLLFGMA 87
Query: 114 DA 115
A
Sbjct: 88 SA 89
>Os10g0344500
Length = 296
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 49/62 (79%)
Query: 54 EVKKQLWLAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLLETLR 113
EVK+ L LAGPL+AG +LR +QM+SVMFVGHLGEL LAG+S+A S +VTGFSLL +
Sbjct: 7 EVKRLLRLAGPLMAGFVLRNSVQMVSVMFVGHLGELQLAGSSLAASLASVTGFSLLSGMS 66
Query: 114 DA 115
A
Sbjct: 67 SA 68
>Os10g0345100 Multi antimicrobial extrusion protein MatE family protein
Length = 479
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 54 EVKKQLWLAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLLETLR 113
E K+ L LAGP+VA +L+ V+ M+SVMFVGHLGELPLAGAS+A S VTG+SLL +
Sbjct: 30 EAKRLLRLAGPIVASCILQCVVNMVSVMFVGHLGELPLAGASLATSLANVTGYSLLTGMA 89
Query: 114 DA 115
A
Sbjct: 90 TA 91
>Os06g0707100 Multi antimicrobial extrusion protein MatE family protein
Length = 483
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 54 EVKKQLWLAGPLVAGALLRYVIQMISVMFVGHLGELPLAGASMANSFTTVTGFSLL 109
EV++Q+ LA PLVA +LL+Y +Q++SVMF GHLGEL L+GAS+A+SF VTGFS+L
Sbjct: 30 EVRRQVGLAAPLVACSLLQYSLQVVSVMFAGHLGELSLSGASVASSFANVTGFSVL 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,440,219
Number of extensions: 89740
Number of successful extensions: 200
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 8
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)