Os06g0707100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os06g0707100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.67 | 0.44 | 7.07 | -0.104 | 0.456 | 0.812 | -0.533 | 0.469 | 0.393 | 0.905 | 67.1 | 1223 | -- | -- |
| 88.07 | 0.437 | 7.07 | -0.0604 | 0.455 | 0.839 | -0.614 | -- | 0.402 | 0.943 | 67.36 | 1224 | -- | -- |
| 88.75 | 0.439 | 7.08 | -0.101 | 0.458 | 0.812 | -- | 0.661 | 0.392 | 0.672 | 67.14 | 1224 | -- | -- |
| 89.59 | 0.441 | 7.07 | -0.0353 | 0.459 | 0.854 | -- | -- | 0.405 | 0.669 | 67.49 | 1224 | -- | -- |
| 98.84 | 0.463 | 7.04 | -0.029 | -- | 0.854 | -- | 0.274 | 0.543 | -- | 71 | 1561 | -- | -- |
| 113.43 | 0.499 | 7.06 | -0.226 | 0.257 | -- | -0.827 | -- | 0.435 | 1.41 | -- | -- | -- | -- |
| 116.05 | 0.504 | 7.05 | -0.197 | 0.26 | -- | -- | -- | 0.441 | 0.611 | -- | -- | -- | -- |
| 98.75 | 0.463 | 7.03 | -0.0502 | -- | 0.818 | -- | -- | 0.553 | -- | 71.36 | 1565 | -- | -- |
| 89.62 | 0.441 | 7.07 | -- | 0.461 | 0.86 | -- | -- | 0.407 | 0.663 | 67.55 | 1222 | -- | -- |
| 120.28 | 0.512 | 7.05 | -0.188 | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
| 117.08 | 0.506 | 7.05 | -- | 0.257 | -- | -- | -- | 0.463 | 0.574 | -- | -- | -- | -- |
| 98.81 | 0.463 | 7.02 | -- | -- | 0.822 | -- | -- | 0.559 | -- | 71.49 | 1560 | -- | -- |
| 121.21 | 0.514 | 7.05 | -- | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.40 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 16 | 89.63 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 17 | 89.63 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 19 | 90.03 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 21 | 90.22 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 22 | 90.27 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 26 | 90.39 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 28 | 90.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 31 | 90.43 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 38 | 90.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 47 | 90.64 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 63 | 90.75 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 66 | 90.78 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 85 | 90.82 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 86 | 90.83 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 87 | 90.84 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 93 | 90.87 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 119 | 91.00 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 143 | 91.05 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 19 | 20 |
| 158 | 91.10 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 170 | 91.13 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 11 |
| 177 | 91.15 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 200 | 91.20 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 210 | 91.23 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 229 | 91.27 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 251 | 91.31 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 12 |
| 269 | 91.34 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 312 | 91.43 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 319 | 91.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 328 | 91.45 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 416 | 91.63 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 470 | 91.72 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 482 | 91.74 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 490 | 91.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 491 | 91.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 553 | 91.85 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 569 | 91.88 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 628 | 91.93 | wind | 3.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 653 | 91.95 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 662 | 91.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 668 | 91.96 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 734 | 92.02 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 766 | 92.05 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 795 | 92.09 | wind | 9.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 843 | 92.18 | humidity | 90.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 845 | 92.18 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 850 | 92.19 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 901 | 92.25 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 921 | 92.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 931 | 92.29 | wind | 3.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 996 | 92.36 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |