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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0495500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0107) R2 : 0.00838
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0442 (0.0225) R2dN8 : 0.0108 R2N8 : 0.00838
σ : 0.201
deviance : 18.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.92 0.199 2.98 0.0399 0.0365 -0.0726 0.193 -0.486 0.0392 8.84 70 6530 -- --
18.18 0.199 2.98 0.0199 0.0296 -0.112 0.142 -- 0.00482 8.62 75.97 8479 -- --
17.99 0.198 2.98 0.0491 0.0305 -0.0573 -- -0.532 0.0426 8.67 71.31 5897 -- --
18.23 0.199 2.98 0.0252 0.0376 -0.132 -- -- -0.00332 8.48 75.98 8119 -- --
18.04 0.198 2.98 0.0438 -- -0.0628 -- -0.523 0.0425 -- 70.01 5880 -- --
18.45 0.201 2.97 0.00461 0.0288 -- 0.145 -- 0.0449 8.77 -- -- -- --
18.52 0.202 2.97 0.00904 0.0305 -- -- -- 0.0448 7.68 -- -- -- --
18.3 0.199 2.98 0.0253 -- -0.121 -- -- -0.000902 -- 76 8546 -- --
18.24 0.199 2.98 -- 0.041 -0.125 -- -- -0.00417 8.24 75.05 8119 -- --
18.57 0.201 2.97 0.00944 -- -- -- -- 0.0452 -- -- -- -- --
18.52 0.201 2.97 -- 0.0306 -- -- -- 0.0438 7.66 -- -- -- --
18.31 0.199 2.98 -- -- -0.116 -- -- -0.00155 -- 75.05 8491 -- --
18.57 0.201 2.97 -- -- -- -- -- 0.0442 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.70 atmosphere 1000.0 30 > th dose independent rect. 21 23
5 16.83 temperature 25.0 30 > th dose dependent rect. 20 3
6 16.85 radiation 10.0 14400 < th dose dependent rect. 21 1
12 16.86 wind 3.0 30 > th dose independent rect. 20 1
13 16.86 temperature 25.0 30 > th dose independent rect. 20 1
14 16.86 temperature 10.0 1440 > th dose independent rect. 21 1
17 16.86 temperature 30.0 1440 < th dose independent rect. 21 1
21 16.86 humidity 50.0 1440 > th dose independent rect. 21 1
27 16.86 humidity 90.0 30 < th dose independent rect. 20 1
28 16.86 atmosphere 995.0 1440 > th dose independent rect. 21 1
29 16.86 radiation 1.0 1440 < th dose independent rect. 21 1
49 16.86 temperature 10.0 1440 > th dose independent rect. 22 23
52 16.86 temperature 25.0 30 > th dose dependent rect. 20 1
53 16.86 radiation 40.0 1440 < th dose dependent rect. 21 1
62 16.87 wind 5.0 30 < th dose independent rect. 20 1
65 16.87 temperature 10.0 30 > th dose independent rect. 20 1
69 16.87 temperature 30.0 30 < th dose independent rect. 20 1
70 16.87 humidity 50.0 30 > th dose independent rect. 20 1
74 16.87 atmosphere 995.0 30 > th dose independent rect. 20 1
77 16.87 atmosphere 1010.0 30 < th dose independent rect. 20 1
79 16.87 radiation 1.0 30 < th dose independent rect. 20 1
84 16.87 precipitation 0.1 30 < th dose independent rect. 20 1
85 16.87 temperature 10.0 30 > th dose independent rect. 21 23
87 16.87 wind 1.0 30 > th dose dependent rect. 20 1
88 16.87 wind 9.0 30 < th dose dependent rect. 20 1
89 16.87 temperature 10.0 30 > th dose dependent rect. 20 1
92 16.87 humidity 50.0 30 > th dose dependent rect. 20 1
93 16.87 humidity 90.0 30 < th dose dependent rect. 20 1
94 16.87 atmosphere 995.0 30 > th dose dependent rect. 20 1
97 16.87 atmosphere 1015.0 30 < th dose dependent rect. 20 1
98 16.87 radiation 1.0 30 < th dose dependent rect. 20 1
105 16.87 precipitation 0.1 30 < th dose dependent rect. 20 1
109 16.88 temperature 30.0 30 < th dose dependent rect. 20 1
125 16.91 wind 9.0 30 < th dose independent rect. 21 23
175 17.01 precipitation 0.1 30 < th dose independent rect. 21 23
176 17.01 precipitation 0.1 30 < th dose dependent rect. 21 23
182 17.10 temperature 25.0 30 > th dose independent rect. 20 3
186 17.13 wind 9.0 1440 < th dose independent rect. 21 1
190 17.22 atmosphere 1005.0 10 > th dose dependent rect. 20 3
193 17.24 humidity 50.0 30 > th dose independent rect. 21 23
205 17.34 precipitation 0.1 1440 < th dose independent rect. 21 1
209 17.34 precipitation 0.1 1440 < th dose dependent rect. 21 1
225 17.45 atmosphere 995.0 30 > th dose dependent rect. 21 23
269 17.54 atmosphere 1000.0 10 > th dose independent rect. 23 21
279 17.55 temperature 25.0 720 > th dose dependent rect. 22 11
280 17.55 atmosphere 995.0 30 > th dose dependent rect. 23 21
292 17.58 humidity 90.0 10 < th dose independent rect. 20 3
293 17.58 atmosphere 1005.0 30 > th dose independent rect. 20 3
308 17.63 atmosphere 995.0 720 > th dose dependent rect. 8 1
310 17.64 wind 3.0 30 > th dose independent rect. 20 3
318 17.65 humidity 80.0 10 > th dose independent rect. 20 3
324 17.66 atmosphere 995.0 10 > th dose independent rect. 10 10
325 17.66 atmosphere 1000.0 720 > th dose independent rect. 21 14
332 17.67 wind 1.0 30 > th dose independent rect. 21 23
334 17.67 atmosphere 1015.0 30 < th dose independent rect. 21 23
343 17.69 atmosphere 1000.0 720 > th dose independent rect. 23 10
352 17.71 temperature 30.0 30 < th dose independent rect. 21 23
378 17.74 atmosphere 995.0 10 > th dose dependent rect. 10 10
382 17.75 wind 5.0 10 < th dose independent rect. 20 3
388 17.75 atmosphere 995.0 30 > th dose dependent rect. 8 12
391 17.76 atmosphere 1000.0 10 > th dose independent rect. 8 12
405 17.77 radiation 10.0 30 < th dose dependent rect. 21 23
422 17.80 wind 7.0 10 < th dose independent rect. 20 14
423 17.80 atmosphere 1015.0 10 < th dose independent rect. 20 14
427 17.81 atmosphere 1005.0 720 > th dose independent rect. 8 1
429 17.81 wind 9.0 10 < th dose independent rect. 10 10
430 17.81 precipitation 0.1 10 < th dose independent rect. 10 10
435 17.81 atmosphere 1000.0 90 > th dose independent rect. 3 23
439 17.81 precipitation 0.1 10 < th dose dependent rect. 10 10
443 17.82 wind 1.0 10 > th dose independent rect. 10 10
444 17.82 temperature 10.0 10 > th dose independent rect. 10 10
446 17.82 atmosphere 1015.0 10 < th dose independent rect. 10 10
448 17.82 temperature 10.0 10 > th dose independent rect. 20 14
449 17.82 humidity 50.0 10 > th dose independent rect. 20 14
450 17.82 atmosphere 995.0 10 > th dose independent rect. 20 14
452 17.82 radiation 10.0 30 < th dose independent rect. 21 23
475 17.83 temperature 30.0 270 < th dose independent rect. 10 11
489 17.84 temperature 25.0 720 > th dose independent rect. 24 9
506 17.84 humidity 80.0 14400 < th dose dependent rect. 21 13
510 17.85 humidity 90.0 90 < th dose independent rect. 2 2
513 17.85 temperature 10.0 1440 > th dose independent rect. 11 10
516 17.85 atmosphere 1000.0 90 > th dose independent rect. 23 13
518 17.85 temperature 10.0 1440 > th dose independent rect. 21 14
523 17.85 precipitation 0.1 30 < th dose independent rect. 20 14
534 17.85 humidity 80.0 14400 < th dose dependent rect. 23 11
536 17.85 precipitation 0.1 30 < th dose dependent rect. 20 14
555 17.86 humidity 80.0 90 < th dose dependent rect. 2 1
556 17.86 humidity 90.0 10 < th dose dependent rect. 3 1
565 17.86 humidity 80.0 14400 < th dose dependent rect. 3 6
578 17.87 temperature 10.0 10 > th dose independent rect. 20 3
582 17.87 temperature 10.0 1440 > th dose independent rect. 21 3
585 17.87 temperature 30.0 10 < th dose independent rect. 20 3
587 17.87 temperature 30.0 1440 < th dose independent rect. 21 3
592 17.87 humidity 50.0 10 > th dose independent rect. 20 3
598 17.87 humidity 50.0 1440 > th dose independent rect. 21 3
604 17.87 atmosphere 995.0 10 > th dose independent rect. 20 3
608 17.87 atmosphere 995.0 1440 > th dose independent rect. 21 3
609 17.87 atmosphere 1010.0 10 < th dose independent rect. 20 3
613 17.87 radiation 1.0 10 < th dose independent rect. 20 3
623 17.87 radiation 1.0 1440 < th dose independent rect. 21 3
643 17.87 precipitation 0.1 10 < th dose independent rect. 20 3
645 17.87 atmosphere 995.0 720 > th dose independent rect. 11 10
646 17.87 atmosphere 1000.0 10 > th dose independent rect. 23 13
648 17.87 atmosphere 995.0 720 > th dose independent rect. 9 14
650 17.87 temperature 10.0 10 > th dose independent rect. 23 21
652 17.87 temperature 10.0 1440 > th dose independent rect. 24 21
669 17.87 radiation 1.0 10 < th dose dependent rect. 20 3
679 17.87 radiation 10.0 1440 < th dose dependent rect. 21 3
684 17.87 radiation 10.0 43200 < th dose dependent rect. 21 3
688 17.87 precipitation 0.1 10 < th dose dependent rect. 20 3
698 17.88 temperature 25.0 720 > th dose independent rect. 2 7
702 17.88 wind 9.0 10 < th dose independent rect. 23 21
704 17.88 precipitation 0.1 10 < th dose independent rect. 23 21
721 17.88 precipitation 0.1 10 < th dose dependent rect. 23 21
723 17.88 radiation 40.0 30 < th dose dependent rect. 21 23
726 17.89 humidity 70.0 14400 > th dose independent rect. 8 2
728 17.89 precipitation 0.1 1440 < th dose independent rect. 21 3
751 17.89 wind 9.0 10 < th dose dependent rect. 20 3
754 17.89 precipitation 0.1 1440 < th dose dependent rect. 21 3
764 17.90 humidity 70.0 14400 < th dose independent rect. 8 2
766 17.90 radiation 10.0 30 > th dose independent rect. 6 2
775 17.90 precipitation 0.1 720 < th dose independent rect. 9 8
777 17.90 humidity 60.0 720 > th dose independent rect. 23 10
786 17.90 precipitation 0.1 720 < th dose independent rect. 9 14
790 17.90 atmosphere 1000.0 10 > th dose independent rect. 4 22
798 17.90 precipitation 0.1 720 < th dose dependent rect. 9 8
803 17.90 precipitation 0.1 720 < th dose dependent rect. 9 14
829 17.91 atmosphere 1005.0 10 > th dose dependent rect. 2 2
841 17.92 wind 3.0 14400 > th dose independent rect. 19 1
852 17.92 temperature 30.0 10 < th dose independent rect. 20 14
853 17.92 humidity 50.0 720 > th dose independent rect. 21 14
855 17.92 atmosphere 1000.0 10 > th dose independent rect. 10 16
858 17.92 atmosphere 1000.0 10 > th dose independent rect. 1 23
882 17.93 temperature 25.0 720 < th dose independent rect. 2 6
884 17.93 precipitation 0.1 720 < th dose independent rect. 11 10
887 17.93 atmosphere 995.0 720 > th dose independent rect. 23 16
888 17.93 humidity 90.0 90 < th dose independent rect. 1 20
889 17.93 humidity 90.0 90 < th dose independent rect. 1 22
891 17.93 precipitation 0.1 720 < th dose independent rect. 9 23
897 17.93 humidity 50.0 10 > th dose dependent rect. 20 3
899 17.93 humidity 90.0 30 < th dose dependent rect. 20 3
904 17.93 precipitation 0.1 720 < th dose dependent rect. 11 10
907 17.93 wind 9.0 10 < th dose dependent rect. 20 14
910 17.93 precipitation 0.1 720 < th dose dependent rect. 9 23
911 17.94 humidity 80.0 4320 < th dose independent rect. 21 1
912 17.94 humidity 60.0 4320 > th dose independent rect. 11 2
920 17.94 atmosphere 1000.0 720 > th dose independent rect. 3 8
923 17.94 wind 9.0 720 < th dose independent rect. 23 10
925 17.94 temperature 10.0 720 > th dose independent rect. 23 10
928 17.94 atmosphere 1015.0 720 < th dose independent rect. 11 10
931 17.94 temperature 10.0 720 > th dose independent rect. 9 14
933 17.94 humidity 50.0 30 > th dose independent rect. 23 21
934 17.94 temperature 30.0 270 < th dose independent rect. 22 23
936 17.94 atmosphere 1000.0 10 > th dose independent rect. 8 23
937 17.94 humidity 80.0 14400 < th dose dependent sin 8 NA
938 17.94 temperature 25.0 720 > th dose dependent rect. 8 1
945 17.94 wind 9.0 30 < th dose dependent rect. 10 10
949 17.94 temperature 10.0 30 > th dose dependent rect. 20 14
953 17.94 atmosphere 995.0 30 > th dose dependent rect. 4 16
956 17.94 temperature 10.0 30 > th dose dependent rect. 21 23
960 17.95 humidity 60.0 4320 < th dose independent rect. 12 1
964 17.95 atmosphere 1000.0 90 > th dose independent rect. 23 2
965 17.95 wind 1.0 14400 < th dose independent rect. 4 3
969 17.95 temperature 30.0 4320 < th dose independent rect. 3 6
973 17.95 temperature 30.0 720 < th dose independent rect. 23 10
991 17.95 radiation 1.0 4320 < th dose dependent rect. 22 5
1000 17.96 wind 3.0 14400 < th dose independent rect. 19 1