Os04g0373400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os04g0373400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 322.15 | 0.843 | 8.63 | 4.5 | 0.533 | 0.716 | 1.01 | -2.2 | 1.01 | 17.6 | 19.4 | 19616 | -- | -- |
| 323.66 | 0.838 | 8.74 | 4.49 | 0.554 | 1.47 | 0.797 | -- | 0.98 | 17.4 | 18.91 | 18206 | -- | -- |
| 323.37 | 0.838 | 8.62 | 4.52 | 0.553 | 0.725 | -- | -2.21 | 1.03 | 16.6 | 19.5 | 19502 | -- | -- |
| 324.82 | 0.839 | 8.73 | 4.57 | 0.551 | 1.5 | -- | -- | 1 | 16.7 | 18.9 | 18191 | -- | -- |
| 339.74 | 0.858 | 8.62 | 4.53 | -- | 0.738 | -- | -2.2 | 1.03 | -- | 19.59 | 19556 | -- | -- |
| 351.79 | 0.879 | 8.84 | 3.26 | 0.543 | -- | 0.922 | -- | 0.537 | 17.4 | -- | -- | -- | -- |
| 352.86 | 0.88 | 8.84 | 3.26 | 0.56 | -- | -- | -- | 0.543 | 16.5 | -- | -- | -- | -- |
| 340.89 | 0.86 | 8.74 | 4.56 | -- | 1.52 | -- | -- | 0.979 | -- | 18.9 | 18243 | -- | -- |
| 471.26 | 1.01 | 9.07 | -- | 0.572 | -1.88 | -- | -- | -0.403 | 15.8 | 21.1 | 47520 | -- | -- |
| 369.59 | 0.898 | 8.83 | 3.24 | -- | -- | -- | -- | 0.528 | -- | -- | -- | -- | -- |
| 633.48 | 1.18 | 8.92 | -- | 0.499 | -- | -- | -- | 0.179 | 16.7 | -- | -- | -- | -- |
| 447.56 | 0.985 | 8.9 | -- | -- | -1.89 | -- | -- | 0.221 | -- | 35.49 | 47520 | -- | -- |
| 646.71 | 1.19 | 8.91 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 312.02 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 2 | 313.73 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 4 | 314.18 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 6 | 314.30 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 16 | 314.35 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 17 | 314.36 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 20 | 314.38 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 21 | 314.39 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 28 | 314.46 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 10 | 15 |
| 29 | 314.53 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 59 | 314.90 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 63 | 314.97 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 72 | 315.07 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 75 | 315.11 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 78 | 315.13 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 91 | 315.27 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 109 | 315.49 | temperature | 15.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 111 | 315.51 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 125 | 315.62 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 140 | 315.78 | temperature | 15.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 165 | 315.95 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 177 | 316.08 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 194 | 316.18 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 274 | 316.55 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 296 | 316.63 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 389 | 316.94 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 4 | 17 |
| 424 | 317.05 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 487 | 317.20 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 12 | 12 |
| 523 | 317.33 | atmosphere | 995.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 531 | 317.36 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 544 | 317.40 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 556 | 317.43 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 579 | 317.48 | atmosphere | 1015.0 | 14400 | < th | dose dependent | sin | 3 | NA |
| 599 | 317.53 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 615 | 317.56 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 626 | 317.60 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 633 | 317.61 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 646 | 317.65 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 670 | 317.69 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 725 | 317.81 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 793 | 317.96 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 817 | 318.00 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 826 | 318.02 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 861 | 318.07 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 874 | 318.09 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 888 | 318.11 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 945 | 318.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 947 | 318.21 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 948 | 318.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 959 | 318.23 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 966 | 318.24 | wind | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |