Os06g0494400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os06g0494400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.84 | 0.687 | 10.9 | 4.12 | 2.45 | 1.64 | 0.323 | -2.95 | 0.836 | 6.19 | 29.6 | 1817 | -- | -- |
| 215.76 | 0.684 | 10.9 | 3.66 | 2.32 | 1.4 | 0.673 | -- | 1.01 | 6.12 | 28.5 | 1893 | -- | -- |
| 214.09 | 0.681 | 10.9 | 4.1 | 2.45 | 1.63 | -- | -2.84 | 0.831 | 6.19 | 29.57 | 1817 | -- | -- |
| 214.88 | 0.683 | 10.9 | 3.61 | 2.5 | 1.33 | -- | -- | 0.934 | 6.24 | 29.01 | 1823 | -- | -- |
| 410.1 | 0.943 | 11 | 4.3 | -- | 1.83 | -- | -2.64 | 1.03 | -- | 29.19 | 575 | -- | -- |
| 272.74 | 0.774 | 11 | 3.18 | 2.63 | -- | 0.377 | -- | 0.715 | 6.24 | -- | -- | -- | -- |
| 273.09 | 0.774 | 11 | 3.18 | 2.64 | -- | -- | -- | 0.713 | 6.24 | -- | -- | -- | -- |
| 319.23 | 0.832 | 10.9 | 3.94 | -- | 2.96 | -- | -- | 1.19 | -- | 28.2 | 552 | -- | -- |
| 531.66 | 1.07 | 11 | -- | 2.62 | 0.551 | -- | -- | 0.443 | 6.16 | 28 | 1880 | -- | -- |
| 633.67 | 1.18 | 11.1 | 3.25 | -- | -- | -- | -- | 0.771 | -- | -- | -- | -- | -- |
| 539.87 | 1.09 | 11.1 | -- | 2.68 | -- | -- | -- | 0.359 | 6.17 | -- | -- | -- | -- |
| 680.66 | 1.22 | 11.1 | -- | -- | 2.34 | -- | -- | 0.622 | -- | 28.46 | 481 | -- | -- |
| 912.89 | 1.41 | 11.1 | -- | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 214.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 2 | 214.59 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 4 | 214.73 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 22 | 215.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 25 | 215.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 30 | 215.72 | temperature | 20.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 38 | 215.93 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 39 | 215.95 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 55 | 216.15 | wind | 3.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 67 | 216.31 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 75 | 216.46 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 95 | 216.83 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 98 | 216.92 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 101 | 216.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 108 | 217.02 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 109 | 217.04 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 111 | 217.04 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 115 | 217.09 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 117 | 217.10 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 118 | 217.11 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 131 | 217.23 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 141 | 217.30 | temperature | 25.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 146 | 217.36 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 147 | 217.36 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 151 | 217.39 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 157 | 217.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 173 | 217.50 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 194 | 217.53 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 197 | 217.56 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 201 | 217.59 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 206 | 217.61 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 218 | 217.63 | wind | 5.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 221 | 217.64 | wind | 5.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 222 | 217.64 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 232 | 217.69 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 265 | 217.89 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 292 | 217.98 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 2 | 17 |
| 302 | 218.02 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 309 | 218.06 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 312 | 218.08 | wind | 5.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 316 | 218.11 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 323 | 218.13 | wind | 5.0 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 363 | 218.29 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 383 | 218.32 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 390 | 218.34 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 427 | 218.46 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 434 | 218.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 439 | 218.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 19 |
| 517 | 218.80 | wind | 7.0 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 528 | 218.84 | wind | 7.0 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 535 | 218.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 565 | 218.93 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 14 |
| 685 | 219.28 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 716 | 219.41 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 723 | 219.44 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 725 | 219.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 732 | 219.46 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 733 | 219.47 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 756 | 219.52 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 783 | 219.61 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 13 |
| 995 | 220.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 997 | 220.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |