FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0344900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0262) R2 : 1.32e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00428 (0.0551) R2dN8 : 1.71e-05 R2N8 : 1.32e-05
σ : 0.493
deviance : 111.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.63 0.476 3.17 0.304 0.0101 0.607 0.54 0.621 0.114 15.9 29.52 334 -- --
102.96 0.473 3.15 0.415 0.0142 0.605 0.388 -- 0.139 15.8 29.9 319 -- --
103.31 0.473 3.16 0.372 0.0173 0.581 -- 0.258 0.13 0.961 29.5 370 -- --
103.39 0.474 3.15 0.417 0.017 0.588 -- -- 0.142 0.236 29.7 368 -- --
103.32 0.473 3.16 0.366 -- 0.587 -- 0.288 0.129 -- 29.5 365 -- --
107.71 0.487 3.18 0.269 0.165 -- -0.319 -- 0.0206 4.58 -- -- -- --
107.96 0.487 3.18 0.272 0.165 -- -- -- 0.0223 4.93 -- -- -- --
103.39 0.474 3.15 0.418 -- 0.584 -- -- 0.141 -- 29.69 335 -- --
107.61 0.483 3.17 -- 0.0283 0.447 -- -- 0.0706 23.7 29.9 369 -- --
109.39 0.489 3.18 0.278 -- -- -- -- 0.0265 -- -- -- -- --
109.91 0.49 3.18 -- 0.169 -- -- -- -0.00796 4.88 -- -- -- --
107.62 0.483 3.17 -- -- 0.445 -- -- 0.0702 -- 29.81 313 -- --
111.42 0.493 3.18 -- -- -- -- -- -0.00428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.65 radiation 10.0 30 < th dose independent rect. 11 1
5 98.48 radiation 10.0 10 < th dose dependent rect. 12 1
7 98.59 wind 1.0 90 < th dose dependent rect. 9 2
12 100.41 wind 1.0 90 < th dose independent rect. 8 2
18 101.31 temperature 30.0 720 < th dose dependent rect. 22 1
19 101.53 radiation 10.0 270 < th dose independent rect. 11 1
20 101.53 atmosphere 1010.0 90 > th dose independent rect. 24 9
23 101.54 atmosphere 1010.0 90 > th dose independent rect. 8 1
24 101.54 atmosphere 1010.0 10 > th dose independent rect. 9 1
81 101.56 wind 1.0 720 < th dose dependent rect. 4 1
82 101.65 radiation 10.0 270 < th dose independent rect. 6 8
84 101.78 temperature 10.0 90 > th dose dependent rect. 23 23
85 101.82 atmosphere 1010.0 720 > th dose independent rect. 9 1
86 101.90 atmosphere 1010.0 720 < th dose independent rect. 10 1
97 101.96 radiation 10.0 270 < th dose independent rect. 19 19
100 102.01 radiation 20.0 270 < th dose dependent rect. 11 1
101 102.01 temperature 20.0 1440 > th dose dependent rect. 20 2
102 102.01 temperature 30.0 270 < th dose dependent rect. 19 21
104 102.06 temperature 20.0 4320 > th dose independent rect. 22 1
117 102.18 temperature 10.0 10 > th dose dependent rect. 24 22
118 102.19 temperature 30.0 10 < th dose dependent rect. 22 18
121 102.20 temperature 30.0 270 < th dose dependent rect. 2 22
130 102.26 radiation 10.0 270 < th dose independent rect. 9 4
134 102.29 temperature 20.0 720 > th dose dependent rect. 16 19
135 102.30 temperature 20.0 4320 < th dose independent rect. 22 1
147 102.34 temperature 30.0 270 < th dose dependent rect. 5 19
149 102.35 temperature 20.0 4320 > th dose independent rect. 21 3
150 102.35 temperature 30.0 90 < th dose dependent rect. 22 1
152 102.35 temperature 20.0 720 > th dose dependent rect. 16 16
153 102.35 temperature 30.0 30 < th dose dependent rect. 7 17
172 102.41 radiation 20.0 10 < th dose independent rect. 10 14
175 102.41 temperature 30.0 270 < th dose dependent rect. 4 23
182 102.43 humidity 70.0 4320 < th dose dependent rect. 19 1
196 102.49 temperature 20.0 4320 < th dose independent rect. 21 3
201 102.50 radiation 1.0 14400 > th dose independent rect. 16 1
202 102.50 wind 1.0 14400 > th dose independent rect. 21 2
204 102.50 radiation 1.0 43200 < th dose dependent rect. 3 1
215 102.52 radiation 1.0 14400 < th dose independent rect. 16 1
226 102.53 temperature 25.0 1440 < th dose independent rect. 18 1
227 102.53 temperature 25.0 1440 < th dose independent rect. 18 4
228 102.53 radiation 1.0 14400 > th dose independent rect. 13 4
230 102.53 temperature 30.0 270 < th dose dependent rect. 11 23
232 102.54 radiation 1.0 43200 < th dose dependent rect. 23 1
239 102.55 temperature 10.0 1440 > th dose dependent rect. 20 2
247 102.56 radiation 1.0 14400 < th dose independent rect. 13 4
262 102.58 precipitation 0.1 43200 > th dose dependent rect. 20 3
266 102.59 temperature 25.0 1440 > th dose independent rect. 18 1
275 102.60 temperature 20.0 720 > th dose dependent sin 12 NA
290 102.62 radiation 1.0 14400 < th dose dependent rect. 16 1
293 102.62 radiation 20.0 270 < th dose dependent rect. 6 8
312 102.66 radiation 20.0 90 > th dose independent rect. 8 1
319 102.67 wind 5.0 43200 < th dose independent rect. 20 1
341 102.70 temperature 25.0 1440 > th dose independent rect. 18 4
344 102.70 radiation 1.0 43200 < th dose dependent rect. 1 2
352 102.71 wind 5.0 43200 > th dose independent rect. 20 1
363 102.72 temperature 30.0 30 < th dose dependent rect. 19 21
370 102.74 humidity 70.0 30 > th dose independent rect. 9 7
392 102.76 wind 5.0 14400 < th dose independent rect. 11 1
393 102.76 temperature 30.0 270 < th dose dependent no NA NA
404 102.76 radiation 20.0 270 < th dose dependent rect. 19 19
406 102.76 temperature 10.0 30 > th dose dependent rect. 3 23
409 102.77 radiation 10.0 720 > th dose independent rect. 17 19
410 102.77 temperature 25.0 4320 < th dose dependent rect. 23 1
454 102.80 temperature 30.0 270 < th dose dependent rect. 19 15
470 102.82 humidity 50.0 4320 < th dose dependent rect. 14 2
477 102.83 radiation 10.0 720 > th dose independent rect. 10 1
478 102.83 precipitation 0.1 43200 > th dose independent rect. 20 1
487 102.84 humidity 50.0 4320 < th dose independent rect. 14 1
488 102.84 precipitation 0.1 43200 < th dose independent rect. 20 1
492 102.84 radiation 10.0 720 > th dose independent rect. 7 5
495 102.84 precipitation 0.1 43200 < th dose dependent rect. 20 1
503 102.85 humidity 70.0 30 > th dose independent rect. 22 18
511 102.85 temperature 30.0 10 < th dose dependent rect. 22 16
534 102.87 radiation 10.0 4320 < th dose dependent rect. 11 20
538 102.88 humidity 50.0 4320 > th dose independent rect. 13 1
574 102.90 wind 1.0 14400 < th dose independent rect. 6 1
593 102.91 radiation 1.0 4320 > th dose independent rect. 4 2
599 102.91 radiation 1.0 4320 < th dose independent rect. 23 7
628 102.92 radiation 1.0 4320 < th dose independent rect. 5 1
646 102.93 radiation 1.0 4320 < th dose independent rect. 3 3
667 102.94 radiation 10.0 4320 < th dose dependent rect. 11 2
678 102.94 temperature 15.0 10 > th dose dependent rect. 10 23
682 102.95 temperature 20.0 1440 > th dose dependent rect. 5 1
697 102.96 humidity 70.0 30 > th dose independent rect. 9 15
703 102.96 temperature 20.0 1440 > th dose dependent rect. 1 7
708 102.96 temperature 10.0 1440 > th dose dependent rect. 18 14
720 102.97 temperature 10.0 30 > th dose dependent rect. 10 12
721 102.97 radiation 1.0 4320 > th dose dependent rect. 17 13
751 102.99 temperature 30.0 1440 < th dose dependent rect. 18 14
775 103.00 radiation 20.0 4320 < th dose dependent rect. 17 13
784 103.00 temperature 10.0 720 > th dose dependent rect. 14 22
862 103.04 atmosphere 1010.0 270 < th dose independent rect. 9 10
864 103.04 temperature 30.0 10 < th dose dependent rect. 22 2
873 103.04 radiation 1.0 43200 < th dose dependent rect. 23 5
897 103.05 radiation 10.0 270 < th dose independent rect. 5 22
920 103.06 temperature 10.0 1440 > th dose dependent sin 12 NA
939 103.06 radiation 40.0 30 < th dose dependent rect. 11 13
953 103.07 radiation 10.0 90 > th dose dependent rect. 8 1
980 103.08 wind 1.0 14400 < th dose independent rect. 21 2
982 103.08 wind 9.0 43200 < th dose independent rect. 18 5
983 103.08 wind 9.0 43200 < th dose independent rect. 18 11
988 103.08 atmosphere 1015.0 4320 > th dose dependent rect. 11 1
989 103.08 radiation 1.0 4320 > th dose dependent rect. 17 1
995 103.08 radiation 10.0 270 < th dose dependent rect. 9 4