BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0483200 Os06g0483200|AK120065
(193 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0483200 Similar to Beta-amyrin synthase 353 3e-98
Os11g0285000 Similar to Beta-amyrin synthase 234 3e-62
Os11g0562100 Terpene synthase family protein 223 7e-59
Os11g0286800 Terpene synthase family protein 214 4e-56
Os02g0139700 Similar to Cycloartenol synthase 204 4e-53
Os08g0223900 Similar to Cycloartenol synthase (EC 5.4.99.8)... 155 2e-38
Os11g0189600 Similar to Cycloartenol synthase 129 2e-30
>Os06g0483200 Similar to Beta-amyrin synthase
Length = 193
Score = 353 bits (907), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/193 (88%), Positives = 171/193 (88%)
Query: 1 MWRLKVAEGGAPGLRSCNGFLGRAVWEFDPNAGTPXXXXXXXXXXXXXXXXXXXXXXAQD 60
MWRLKVAEGGAPGLRSCNGFLGRAVWEFDPNAGTP AQD
Sbjct: 1 MWRLKVAEGGAPGLRSCNGFLGRAVWEFDPNAGTPEERAEVERMRREFTLRRFERREAQD 60
Query: 61 LLMRMQYAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWPGDFSG 120
LLMRMQYAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWPGDFSG
Sbjct: 61 LLMRMQYAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWPGDFSG 120
Query: 121 IMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMFGSCLK 180
IMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMFGSCLK
Sbjct: 121 IMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMFGSCLK 180
Query: 181 LCDLTTSWSGEEY 193
LCDLTTSWSGEEY
Sbjct: 181 LCDLTTSWSGEEY 193
>Os11g0285000 Similar to Beta-amyrin synthase
Length = 760
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/190 (61%), Positives = 137/190 (72%), Gaps = 6/190 (3%)
Query: 1 MWRLKVA------EGGAPGLRSCNGFLGRAVWEFDPNAGTPXXXXXXXXXXXXXXXXXXX 54
MWRLK+A G +P L + NGFLGRAVWEFDP+AGTP
Sbjct: 1 MWRLKIAAESGGGSGSSPLLHTGNGFLGRAVWEFDPDAGTPEERAEVARLRRDFTRHRFQ 60
Query: 55 XXXAQDLLMRMQYAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHW 114
+QDLLMRMQYAK LQ D+ A + D+ VTE+ IL+SLRRAL Q+S+LQAHDGHW
Sbjct: 61 RKESQDLLMRMQYAKLGHLQPDLSAVIVEDNQNVTEETILSSLRRALNQYSTLQAHDGHW 120
Query: 115 PGDFSGIMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTM 174
PGD+SGI+FIMP+LIF++++TG+LD VLS EH+REICRYIYNHQNEDG WGTQVLG STM
Sbjct: 121 PGDYSGILFIMPLLIFSMHVTGTLDVVLSLEHKREICRYIYNHQNEDGGWGTQVLGQSTM 180
Query: 175 FGSCLKLCDL 184
FGSCL L
Sbjct: 181 FGSCLNYATL 190
>Os11g0562100 Terpene synthase family protein
Length = 762
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 129/189 (68%), Gaps = 5/189 (2%)
Query: 1 MWRLKVAEGGAPGLRSCNGFLGRAVWEFDPNAGTPXXXXXXXXXXXXXXXXXXXXXXAQD 60
MWRLKVA+GG LRS NGF GRAVWEFDP+ GTP + D
Sbjct: 1 MWRLKVAQGGGALLRSTNGFAGRAVWEFDPDHGTPEDRANVERVRRDFTDHRLRRPESAD 60
Query: 61 LLMRMQYAKQNRLQ-----VDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWP 115
LLMRMQ+A++N Q + +KL + QVTE+ ++ASLRRAL + SSLQA DGHWP
Sbjct: 61 LLMRMQFARENNHQRRGDRIPPAVNKLGEKEQVTEETVMASLRRALDEFSSLQADDGHWP 120
Query: 116 GDFSGIMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMF 175
GD SG +FIMP+LIF+LY TGSLD V+SSEHRREICRYIYNHQNEDG WG +LG STMF
Sbjct: 121 GDLSGAIFIMPVLIFSLYATGSLDTVISSEHRREICRYIYNHQNEDGGWGMLILGSSTMF 180
Query: 176 GSCLKLCDL 184
+CL L
Sbjct: 181 ATCLNYVTL 189
>Os11g0286800 Terpene synthase family protein
Length = 756
Score = 214 bits (544), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/185 (55%), Positives = 127/185 (68%), Gaps = 1/185 (0%)
Query: 1 MWRLKVAEGGA-PGLRSCNGFLGRAVWEFDPNAGTPXXXXXXXXXXXXXXXXXXXXXXAQ 59
MW+LK EG + P LRS NGFLGR WEFDPN G+P
Sbjct: 1 MWKLKFGEGASNPLLRSSNGFLGRETWEFDPNGGSPEEHAVVERLRRDFTRNRFTQRECS 60
Query: 60 DLLMRMQYAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWPGDFS 119
DLLMRMQ+AK+N++ S L DS++VTE+++L SLRR L Q+SSLQA DG+WPG +S
Sbjct: 61 DLLMRMQFAKENQVYSKHEVSNLKDSSEVTEEVLLTSLRRVLDQYSSLQAPDGYWPGGYS 120
Query: 120 GIMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMFGSCL 179
GI+FI+P++IFAL++T SL+ VLSSEH REICRYIYN QNEDG W T LGPS+MFGSC+
Sbjct: 121 GILFILPLMIFALHVTKSLNDVLSSEHIREICRYIYNIQNEDGGWSTHTLGPSSMFGSCV 180
Query: 180 KLCDL 184
L
Sbjct: 181 NYATL 185
>Os02g0139700 Similar to Cycloartenol synthase
Length = 759
Score = 204 bits (519), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 125/185 (67%), Gaps = 1/185 (0%)
Query: 1 MWRLKVAEGGA-PGLRSCNGFLGRAVWEFDPNAGTPXXXXXXXXXXXXXXXXXXXXXXAQ 59
MWRL+VAEGG P LR+ NG +GR VWEFDP AG P +
Sbjct: 1 MWRLRVAEGGGDPWLRTKNGHVGRQVWEFDPAAGDPDELAAVEAARRGFAARRHELKHSS 60
Query: 60 DLLMRMQYAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWPGDFS 119
DLLMRMQ+AK N L++D+PA KL + VT + +L+SL+RA+ ++S+ QAHDGHWPGD+
Sbjct: 61 DLLMRMQFAKANPLKLDIPAIKLEEHEAVTGEAVLSSLKRAIARYSTFQAHDGHWPGDYG 120
Query: 120 GIMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMFGSCL 179
G MF+MP LI LY++G+L+ LSSEH++EI RY+YNHQNEDG WG + G STMFGS L
Sbjct: 121 GPMFLMPGLIITLYVSGALNTALSSEHQKEIRRYLYNHQNEDGGWGLHIEGHSTMFGSAL 180
Query: 180 KLCDL 184
L
Sbjct: 181 TYVSL 185
>Os08g0223900 Similar to Cycloartenol synthase (EC 5.4.99.8) (Fragment)
Length = 785
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 100/184 (54%), Gaps = 1/184 (0%)
Query: 1 MWRLKVAEGGAPGLRSCNGFLGRAVWEFDPNAGTPXXXXXXXXXXXXXXXXXXXXXXAQD 60
MW+LK+AEGG P L+S N +GR WEFDPN GT D
Sbjct: 1 MWKLKIAEGG-PWLKSGNSHVGRETWEFDPNFGTSEEREAVEAARIEFQKNRFRTRHTSD 59
Query: 61 LLMRMQYAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWPGDFSG 120
+L RMQ AK N +D+ K + + + L++AL+ S++QA+DGHWPGDF G
Sbjct: 60 VLARMQLAKANNFSIDLQKEKDGNPINIDTATVSDILKKALSYFSAIQAYDGHWPGDFPG 119
Query: 121 IMFIMPILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMFGSCLK 180
+F +I LY+T SL LSSEH +EICRY+YN QN DG WG G S+M + L
Sbjct: 120 PLFTTATMIIVLYVTESLTITLSSEHHKEICRYLYNRQNIDGGWGLHAEGESSMLSTALN 179
Query: 181 LCDL 184
L
Sbjct: 180 YTAL 183
>Os11g0189600 Similar to Cycloartenol synthase
Length = 718
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 85/118 (72%)
Query: 67 YAKQNRLQVDVPASKLVDSTQVTEQIILASLRRALTQHSSLQAHDGHWPGDFSGIMFIMP 126
+AK+N ++D+ A K + V + + +SL+RA+++ +LQAHDGHWPGD++G+MF +P
Sbjct: 26 FAKENCQKLDLLAVKRGEHEDVMGEAVWSSLKRAISRVCNLQAHDGHWPGDYAGLMFFLP 85
Query: 127 ILIFALYITGSLDAVLSSEHRREICRYIYNHQNEDGSWGTQVLGPSTMFGSCLKLCDL 184
LI L+++G L+ VLSSEH++E+ RYIYNHQNEDG WG + G STM GS L L
Sbjct: 86 GLIITLHVSGVLNTVLSSEHQKEMRRYIYNHQNEDGGWGLHIEGHSTMLGSSLNYVAL 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,051,281
Number of extensions: 192824
Number of successful extensions: 420
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 7
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)