Os11g0285000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-amyrin synthase.
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Os11g0285000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-amyrin synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 464.17 | 1.01 | 7.96 | -3 | 2.09 | 4.21 | -0.152 | 17.7 | -0.122 | 4.89 | 42.83 | 5649 | 7.24 | -- |
| 720.52 | 1.25 | 7.69 | -3.47 | 2.37 | 3.47 | 1.55 | -- | -0.509 | 5.27 | -9.235 | 14810 | 8.28 | -- |
| 463.17 | 1 | 7.97 | -3.1 | 2.07 | 4.39 | -- | 18.4 | -0.11 | 4.95 | 43.45 | 5652 | 7.06 | -- |
| 709.67 | 1.24 | 7.72 | -3.9 | 2.42 | 3.14 | -- | -- | -0.528 | 4.88 | -3.028 | 14809 | 8.56 | -- |
| 691.18 | 1.22 | 7.98 | -2.9 | -- | 4.49 | -- | 18.3 | -0.0657 | -- | 45.04 | 5650 | 8.02 | -- |
| 989.92 | 1.48 | 7.55 | -4.73 | 2.33 | -- | 0.359 | -- | 0.281 | 4.48 | -- | -- | -- | -- |
| 990.27 | 1.47 | 7.55 | -4.73 | 2.33 | -- | -- | -- | 0.279 | 4.47 | -- | -- | -- | -- |
| 749.08 | 1.27 | 7.89 | -3.53 | -- | 5.26 | -- | -- | -0.661 | -- | -31.91 | 8154 | 8.31 | -- |
| 1047.95 | 1.51 | 7.8 | -- | 2.14 | 4.03 | -- | -- | -0.576 | 5.05 | -0.005316 | 15507 | 7.4 | -- |
| 1281.34 | 1.67 | 7.57 | -4.64 | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
| 1580.75 | 1.86 | 7.43 | -- | 2.24 | -- | -- | -- | 0.807 | 4.52 | -- | -- | -- | -- |
| 1060.74 | 1.52 | 7.78 | -- | -- | 5.75 | -- | -- | -0.484 | -- | -27.72 | 16602 | 7.1 | -- |
| 1849.81 | 2.01 | 7.45 | -- | -- | -- | -- | -- | 0.856 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 461.30 | temperature | 25 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 462.71 | temperature | 30 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 17 | 462.72 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 18 | 462.73 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 22 | 462.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 23 | 462.77 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 38 | 464.83 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 67 | 465.87 | temperature | 30 | 43200 | < th | dose independent | sin | 13 | NA |
| 69 | 465.93 | temperature | 30 | 43200 | > th | dose independent | sin | 13 | NA |
| 86 | 466.18 | radiation | 10 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 111 | 467.13 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 140 | 468.03 | radiation | 10 | 14400 | < th | dose dependent | rect. | 15 | 15 |
| 157 | 468.22 | radiation | 10 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 170 | 468.71 | radiation | 10 | 14400 | < th | dose dependent | rect. | 15 | 12 |
| 173 | 468.73 | radiation | 10 | 14400 | < th | dose dependent | rect. | 15 | 10 |
| 226 | 469.42 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 232 | 469.75 | temperature | 30 | 43200 | > th | dose dependent | sin | 13 | NA |
| 233 | 469.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 238 | 470.00 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 258 | 470.34 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 273 | 470.71 | temperature | 30 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 309 | 470.88 | radiation | 10 | 14400 | < th | dose dependent | rect. | 15 | 19 |
| 372 | 471.55 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 381 | 471.66 | radiation | 10 | 14400 | < th | dose dependent | sin | 13 | NA |
| 433 | 472.13 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 481 | 472.89 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 794 | 475.52 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 805 | 475.67 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 811 | 475.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 816 | 475.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 819 | 475.80 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 14 |
| 849 | 476.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 867 | 476.37 | temperature | 25 | 43200 | < th | dose dependent | sin | 17 | NA |
| 968 | 477.03 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 976 | 477.11 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 980 | 477.14 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 994 | 477.26 | temperature | 25 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 999 | 477.31 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 12 |