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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0223900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cycloartenol synthase (EC 5.4.99.8) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0242) R2 : 0.0157
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.137 (0.0509) R2dN8 : 0.0202 R2N8 : 0.0157
σ : 0.455
deviance : 95.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.31 0.444 3.18 1.28 0.148 -0.83 0.153 5.93 0.258 10.5 28.54 1680 -- --
91.49 0.445 3.31 0.236 0.158 -0.133 0.191 -- 0.144 9.98 33.4 1957 -- --
89.39 0.44 3.18 1.28 0.149 -0.82 -- 5.83 0.265 10.3 28.46 1680 -- --
91.45 0.445 3.31 0.239 0.158 -0.145 -- -- 0.135 9.32 33.7 1948 -- --
90.51 0.443 3.18 1.33 -- -0.881 -- 6.15 0.279 -- 28.36 2203 -- --
92.36 0.451 3.3 0.201 0.169 -- 0.122 -- 0.159 9.83 -- -- -- --
92.41 0.45 3.3 0.205 0.17 -- -- -- 0.159 9.59 -- -- -- --
92.87 0.449 3.31 0.247 -- -0.161 -- -- 0.122 -- 30.01 5573 -- --
92.91 0.449 3.31 -- 0.165 -0.114 -- -- 0.116 9.16 33.44 1717 -- --
94.11 0.453 3.31 0.204 -- -- -- -- 0.16 -- -- -- -- --
93.52 0.452 3.31 -- 0.169 -- -- -- 0.136 9.5 -- -- -- --
93.93 0.451 3.3 -- -- -0.175 -- -- 0.17 -- 31.2 7886 -- --
95.21 0.455 3.31 -- -- -- -- -- 0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.65 wind 3.0 43200 < th dose dependent rect. 9 1
2 88.92 radiation 30.0 30 > th dose dependent rect. 14 1
3 88.95 wind 1.0 43200 > th dose independent rect. 8 2
4 88.96 radiation 30.0 30 > th dose independent rect. 14 1
7 88.99 temperature 25.0 30 > th dose independent rect. 14 1
9 89.01 temperature 30.0 30 < th dose independent rect. 14 1
10 89.01 radiation 10.0 30 > th dose independent rect. 14 1
11 89.02 temperature 10.0 1440 > th dose independent rect. 15 1
16 89.02 temperature 10.0 1440 > th dose independent rect. 16 23
19 89.03 humidity 80.0 30 < th dose independent rect. 14 1
22 89.05 wind 7.0 30 < th dose independent rect. 14 1
23 89.05 wind 9.0 30 < th dose dependent rect. 14 1
25 89.06 temperature 10.0 30 > th dose dependent rect. 14 1
28 89.06 atmosphere 1015.0 30 < th dose dependent rect. 14 1
29 89.08 humidity 50.0 30 > th dose independent rect. 14 1
32 89.09 temperature 10.0 30 > th dose independent rect. 14 1
34 89.09 atmosphere 995.0 30 > th dose independent rect. 14 1
35 89.09 atmosphere 1010.0 30 < th dose independent rect. 14 1
38 89.09 precipitation 0.1 30 < th dose independent rect. 14 1
39 89.09 temperature 10.0 30 > th dose independent rect. 15 23
40 89.09 wind 1.0 43200 < th dose dependent rect. 14 1
41 89.09 precipitation 0.1 30 < th dose dependent rect. 14 1
43 89.10 wind 1.0 30 > th dose independent rect. 14 1
46 89.10 humidity 90.0 30 < th dose dependent rect. 14 1
48 89.13 atmosphere 1005.0 30 > th dose dependent rect. 14 1
51 89.15 atmosphere 995.0 30 > th dose dependent rect. 14 1
52 89.16 atmosphere 1005.0 30 > th dose independent rect. 14 1
53 89.16 radiation 40.0 30 < th dose independent rect. 14 1
54 89.16 wind 5.0 14400 < th dose independent rect. 9 7
55 89.16 wind 7.0 14400 < th dose dependent rect. 11 1
60 89.18 wind 5.0 14400 < th dose independent rect. 11 1
62 89.19 wind 5.0 14400 > th dose independent rect. 10 6
69 89.22 wind 1.0 14400 > th dose dependent rect. 11 1
70 89.22 wind 1.0 30 > th dose dependent rect. 14 1
71 89.23 humidity 90.0 90 < th dose dependent rect. 2 5
72 89.24 wind 3.0 14400 > th dose independent rect. 23 1
73 89.25 wind 5.0 14400 > th dose independent rect. 11 1
80 89.28 wind 1.0 43200 < th dose dependent rect. 2 1
86 89.31 wind 1.0 43200 < th dose independent rect. 8 3
87 89.31 humidity 50.0 30 > th dose dependent rect. 14 1
88 89.31 precipitation 0.1 14400 > th dose dependent rect. 21 3
95 89.33 wind 7.0 43200 < th dose dependent rect. 8 9
97 89.34 wind 3.0 14400 > th dose dependent rect. 23 1
109 89.38 precipitation 0.1 14400 > th dose independent rect. 21 3
112 89.38 wind 1.0 43200 > th dose dependent rect. 9 8
115 89.39 precipitation 0.1 14400 < th dose independent rect. 21 3
117 89.39 precipitation 0.1 14400 < th dose dependent rect. 21 3
120 89.40 wind 5.0 43200 > th dose independent rect. 14 2
128 89.41 wind 5.0 43200 < th dose dependent rect. 19 2
140 89.44 wind 5.0 43200 > th dose dependent rect. 15 1
147 89.45 temperature 25.0 90 > th dose dependent rect. 1 5
152 89.46 wind 3.0 43200 > th dose independent rect. 20 1
155 89.46 humidity 90.0 14400 > th dose dependent rect. 5 1
164 89.46 wind 7.0 43200 < th dose dependent rect. 8 13
166 89.47 wind 3.0 43200 < th dose independent rect. 19 2
171 89.47 wind 1.0 14400 > th dose dependent rect. 11 3
177 89.48 wind 5.0 43200 < th dose independent rect. 15 1
205 89.49 wind 1.0 43200 > th dose dependent rect. 8 13
253 89.54 wind 1.0 30 < th dose independent rect. 10 1
254 89.54 temperature 10.0 1440 > th dose independent rect. 11 1
258 89.54 atmosphere 995.0 1440 > th dose independent rect. 11 1
261 89.54 precipitation 0.1 1440 < th dose independent rect. 11 1
263 89.54 humidity 80.0 43200 > th dose independent rect. 21 2
270 89.54 temperature 10.0 1440 > th dose independent rect. 12 23
273 89.54 wind 1.0 30 < th dose dependent rect. 10 1
274 89.54 precipitation 0.1 1440 < th dose dependent rect. 11 1
289 89.55 wind 5.0 14400 < th dose independent rect. 22 2
291 89.55 wind 7.0 43200 < th dose dependent sin 22 NA
313 89.56 humidity 90.0 90 < th dose independent rect. 2 4
316 89.56 wind 1.0 43200 > th dose dependent sin 22 NA
376 89.59 radiation 30.0 14400 < th dose independent rect. 16 12
377 89.59 wind 1.0 43200 > th dose dependent rect. 13 1
378 89.59 wind 9.0 43200 < th dose dependent rect. 13 1
392 89.60 humidity 80.0 43200 < th dose independent rect. 21 3
424 89.61 humidity 80.0 43200 > th dose independent rect. 21 8
445 89.62 radiation 40.0 30 < th dose independent rect. 10 1
475 89.63 humidity 80.0 43200 > th dose independent rect. 4 1
483 89.63 temperature 25.0 1440 > th dose dependent rect. 17 1
498 89.64 radiation 30.0 14400 < th dose independent rect. 16 1
505 89.64 humidity 80.0 43200 < th dose dependent rect. 4 1
516 89.65 humidity 80.0 43200 < th dose independent rect. 4 1
586 89.67 humidity 80.0 43200 < th dose independent rect. 21 9
587 89.67 radiation 30.0 14400 < th dose independent rect. 16 9
615 89.68 radiation 30.0 14400 < th dose independent rect. 16 6
629 89.68 wind 1.0 43200 > th dose dependent rect. 19 2
646 89.69 humidity 70.0 30 < th dose independent rect. 10 1
647 89.69 atmosphere 1010.0 30 < th dose independent rect. 10 1
662 89.69 wind 3.0 43200 > th dose independent rect. 8 15
666 89.69 radiation 1.0 14400 < th dose dependent rect. 2 3
691 89.70 wind 5.0 43200 < th dose independent sin 20 NA
735 89.71 wind 5.0 43200 > th dose independent sin 20 NA
738 89.71 atmosphere 1005.0 30 > th dose independent rect. 10 1
739 89.71 radiation 10.0 14400 > th dose independent rect. 5 1
765 89.71 wind 3.0 43200 < th dose independent rect. 8 15
813 89.72 radiation 10.0 43200 < th dose dependent rect. 9 1
827 89.72 wind 3.0 43200 > th dose dependent rect. 12 15
848 89.73 temperature 25.0 30 > th dose dependent rect. 10 1
889 89.74 wind 5.0 43200 < th dose independent rect. 12 10
898 89.74 wind 5.0 43200 > th dose independent rect. 12 14
901 89.74 wind 5.0 43200 < th dose independent rect. 12 14
921 89.74 radiation 20.0 1440 < th dose dependent rect. 18 10
950 89.75 wind 1.0 43200 > th dose independent rect. 2 1
955 89.75 wind 5.0 43200 > th dose independent rect. 14 8
982 89.75 temperature 25.0 4320 > th dose dependent rect. 9 1