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Os06g0483200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-amyrin synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.33 (0.0705) R2 : 0.715
β1 : -6.92 (0.432) R2dD : 0.829 R2D : -0.0107
β2 : 2.32 (0.135) R2dC : 0.187 R2C : 0.171
β3 : 4.32 (0.218) R2dE : 0.481 R2E : 0.0913
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.94 (1.52) R2dD*E : 0.14 R2D*E : -0.466
γ1 : -0.708 (0.151) R2dN8 : 0.0329 R2N8 : -0.0816
σ : 0.991
deviance : 452.87
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_____
C
peak time of C : 8.01
E
wheather : temperature
threshold : 24.48
memory length : 1218
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
448.73 0.995 8.33 -6.94 2.32 4.32 1.19 -9.83 -0.705 8.06 24.47 1219 11.1 --
491.47 1.03 8 -4.38 2.25 3.65 1.86 -- 0.00489 8.33 24.53 1178 9.66 --
452.87 0.991 8.33 -6.92 2.32 4.32 -- -9.94 -0.708 8.01 24.48 1218 11.1 --
493.96 1.04 8.01 -4.41 2.27 3.36 -- -- -0.00631 7.81 24.92 1229 9.84 --
659.45 1.2 8.39 -5.97 -- 4.94 -- -6.23 -1.1 -- 21.83 893 5.61 --
877.88 1.39 7.94 -3.45 2.62 -- 1.01 -- 0.326 6.81 -- -- -- --
880.4 1.39 7.94 -3.43 2.63 -- -- -- 0.323 6.76 -- -- -- --
674.22 1.21 8.23 -4.47 -- 4.45 -- -- -0.645 -- 20.72 836 5.33 --
979.99 1.46 7.76 -- 2.49 2.39 -- -- 0.748 7.67 25.4 2364 7.05 --
1241.71 1.65 7.99 -3.37 -- -- -- -- 0.374 -- -- -- -- --
1190.8 1.61 7.85 -- 2.59 -- -- -- 0.705 6.84 -- -- -- --
1169.81 1.59 8.09 -- -- 3.51 -- -- 0.0273 -- 21.11 765 5.01 --
1541.71 1.83 7.91 -- -- -- -- -- 0.748 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 427.80 humidity 90 43200 > th dose dependent rect. 22 1
2 428.64 humidity 90 43200 > th dose dependent rect. 20 3
13 436.54 humidity 90 43200 > th dose independent rect. 21 2
29 443.07 humidity 90 43200 < th dose independent rect. 20 3
30 443.08 humidity 90 43200 > th dose independent rect. 18 5
48 447.94 wind 5 43200 > th dose independent rect. 11 1
51 448.23 wind 5 43200 < th dose independent rect. 11 1
68 451.36 humidity 90 43200 > th dose dependent sin 16 NA
73 451.65 radiation 20 14400 > th dose dependent rect. 16 15
74 451.70 radiation 40 14400 < th dose dependent rect. 18 11
75 451.78 humidity 90 43200 < th dose independent rect. 18 7
121 455.77 humidity 90 43200 > th dose dependent rect. 9 17
123 455.99 humidity 90 43200 > th dose dependent rect. 8 19
135 456.47 humidity 90 43200 > th dose independent rect. 18 1
149 457.32 humidity 90 43200 < th dose independent rect. 18 1
160 458.08 humidity 90 43200 < th dose independent sin 16 NA
167 458.39 humidity 90 43200 > th dose independent sin 16 NA
172 458.57 radiation 10 14400 < th dose dependent rect. 18 2
183 458.93 humidity 90 43200 > th dose independent rect. 18 16
200 459.42 humidity 90 43200 > th dose dependent rect. 2 22
211 459.68 humidity 90 43200 < th dose independent rect. 17 18
218 459.92 humidity 90 43200 > th dose dependent rect. 15 20
222 460.03 humidity 90 43200 > th dose dependent rect. 17 18
250 460.39 humidity 80 43200 > th dose independent rect. 11 3
293 460.91 radiation 1 1440 < th dose dependent rect. 8 22
339 461.48 humidity 90 43200 < th dose independent rect. 8 20
348 461.55 humidity 90 43200 > th dose dependent no NA NA
380 461.88 humidity 90 43200 > th dose independent rect. 8 21
409 462.18 wind 3 43200 > th dose dependent rect. 11 1
411 462.19 humidity 90 43200 > th dose independent rect. 2 22
419 462.28 humidity 90 43200 > th dose dependent rect. 20 23
484 462.84 humidity 90 43200 > th dose independent rect. 9 15
493 462.95 humidity 80 43200 < th dose independent rect. 11 3
500 463.09 humidity 90 43200 > th dose independent rect. 9 2
539 463.46 radiation 20 14400 > th dose dependent rect. 16 1
594 463.93 humidity 90 43200 > th dose independent rect. 12 15
596 463.94 humidity 90 43200 > th dose independent no NA NA
675 465.09 radiation 30 14400 < th dose independent rect. 15 16
693 465.34 humidity 70 14400 > th dose independent rect. 19 12
700 465.47 humidity 90 43200 < th dose independent rect. 10 1
707 465.52 radiation 1 1440 < th dose dependent rect. 18 10
713 465.58 humidity 90 43200 < th dose independent no NA NA
727 465.82 humidity 90 43200 < th dose independent rect. 24 23
746 466.11 humidity 90 43200 < th dose independent rect. 2 23
749 466.16 atmosphere 1005 43200 > th dose independent rect. 16 1
773 466.52 radiation 30 14400 < th dose independent rect. 15 14
791 466.81 radiation 30 14400 < th dose independent rect. 15 3
799 466.87 radiation 30 14400 < th dose independent rect. 15 5
833 467.71 radiation 1 14400 < th dose independent rect. 18 11
837 467.78 radiation 1 1440 < th dose dependent rect. 18 7
858 468.17 radiation 1 14400 > th dose dependent rect. 17 12
866 468.46 radiation 1 1440 < th dose dependent rect. 18 1
879 468.74 humidity 70 14400 > th dose independent rect. 19 1
908 469.42 radiation 1 14400 > th dose independent rect. 18 11
910 469.43 humidity 80 43200 > th dose dependent rect. 10 1
931 469.91 radiation 1 1440 < th dose dependent rect. 17 23
944 470.14 temperature 20 43200 < th dose independent rect. 20 2
949 470.18 atmosphere 1005 43200 < th dose independent rect. 16 1
952 470.23 radiation 1 14400 > th dose dependent rect. 17 2
967 470.39 humidity 70 14400 > th dose independent rect. 19 10
974 470.43 humidity 90 43200 > th dose independent rect. 2 9
979 470.52 temperature 25 43200 > th dose independent rect. 17 1
983 470.58 temperature 25 43200 < th dose independent rect. 17 1
984 470.58 humidity 80 43200 > th dose dependent rect. 10 3
1000 470.83 temperature 20 43200 > th dose independent rect. 20 2