Os02g0139700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cycloartenol synthase.
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Os02g0139700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cycloartenol synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.15 | 0.367 | 11.7 | -0.62 | 2.7 | 1.13 | 0.617 | 0.143 | 0.156 | 6.85 | 71.45 | 256 | -- | -- |
| 60.97 | 0.364 | 11.7 | -0.649 | 2.69 | 1.1 | 0.645 | -- | 0.159 | 6.85 | 74 | 256 | -- | -- |
| 61.67 | 0.366 | 11.7 | -0.644 | 2.73 | 1.08 | -- | 0.396 | 0.154 | 6.78 | 74.75 | 264 | -- | -- |
| 62.12 | 0.367 | 11.7 | -0.628 | 2.71 | 1.11 | -- | -- | 0.159 | 6.8 | 74.53 | 261 | -- | -- |
| 205.47 | 0.668 | 11.7 | -0.496 | -- | 3.55 | -- | 0.334 | 0.432 | -- | 68.84 | 464 | -- | -- |
| 87.02 | 0.437 | 11.7 | -0.558 | 3.42 | -- | 0.748 | -- | 0.0537 | 6.26 | -- | -- | -- | -- |
| 88.4 | 0.44 | 11.7 | -0.549 | 3.42 | -- | -- | -- | 0.051 | 6.26 | -- | -- | -- | -- |
| 204.73 | 0.666 | 11.7 | -0.596 | -- | 3.62 | -- | -- | 0.395 | -- | 68.24 | 467 | -- | -- |
| 71.72 | 0.394 | 11.7 | -- | 2.73 | 1.11 | -- | -- | 0.214 | 6.9 | 69.16 | 233 | -- | -- |
| 695.62 | 1.23 | 11.8 | -0.457 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 96.35 | 0.459 | 11.7 | -- | 3.41 | -- | -- | -- | 0.112 | 6.27 | -- | -- | -- | -- |
| 213.9 | 0.681 | 11.7 | -- | -- | 3.64 | -- | -- | 0.45 | -- | 67.41 | 470 | -- | -- |
| 701.11 | 1.24 | 11.8 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.78 | humidity | 90 | 270 | < th | dose independent | rect. | 3 | 21 |
| 2 | 59.80 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 18 |
| 9 | 60.54 | humidity | 70 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 20 | 60.91 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 23 | 61.03 | humidity | 90 | 720 | > th | dose independent | rect. | 6 | 15 |
| 24 | 61.05 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 25 | 61.06 | humidity | 70 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 26 | 61.09 | humidity | 70 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 28 | 61.15 | humidity | 80 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 30 | 61.23 | humidity | 90 | 720 | > th | dose independent | rect. | 6 | 17 |
| 36 | 61.29 | humidity | 70 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 43 | 61.42 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 50 | 61.49 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 59 | 61.55 | humidity | 70 | 270 | > th | dose dependent | no | NA | NA |
| 76 | 61.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 79 | 61.75 | humidity | 80 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 84 | 61.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 20 |
| 91 | 61.82 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 92 | 61.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 93 | 61.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 100 | 61.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 112 | 61.89 | humidity | 70 | 1440 | > th | dose dependent | sin | 0 | NA |
| 117 | 61.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 118 | 61.91 | humidity | 90 | 720 | > th | dose dependent | sin | 22 | NA |
| 121 | 61.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 137 | 61.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 155 | 62.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 163 | 62.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 176 | 62.18 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 202 | 62.25 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 9 |
| 358 | 62.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 371 | 62.83 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 385 | 62.86 | humidity | 90 | 270 | < th | dose independent | rect. | 12 | 23 |
| 386 | 62.86 | humidity | 90 | 270 | < th | dose independent | rect. | 19 | 23 |
| 513 | 63.32 | humidity | 90 | 270 | < th | dose independent | sin | 0 | NA |
| 549 | 63.42 | humidity | 90 | 270 | < th | dose independent | no | NA | NA |
| 929 | 64.21 | humidity | 90 | 270 | < th | dose independent | rect. | 22 | 23 |