BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0217300 Os06g0217300|AK111859
(223 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0217300 Similar to Transcription factor MADS55 328 2e-90
Os02g0761000 Similar to Transcription factor MADS55 238 2e-63
Os03g0186600 Transcription factor, MADS-box domain containi... 149 1e-36
Os02g0579600 Transcription factor MADS27 85 4e-17
Os02g0731200 Transcription factor MADS57 75 6e-14
Os08g0431900 Transcription factor MADS23 69 3e-12
AF109153 66 2e-11
Os04g0580700 MADS box transcription factor MADS17 66 2e-11
>Os06g0217300 Similar to Transcription factor MADS55
Length = 223
Score = 328 bits (840), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/206 (81%), Positives = 168/206 (81%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNLG 77
QVTFSKRRRGLFKKAEE FSSTGKLSQFASSNMNEIIDKYTTHSKNLG
Sbjct: 18 QVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLG 77
Query: 78 KTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGLQR 137
KTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMR QQMEKNLEAGLQR
Sbjct: 78 KTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQR 137
Query: 138 VLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSES 197
VLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSES
Sbjct: 138 VLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSES 197
Query: 198 VMTALXXXXXXXXXXXXXISLKLGLP 223
VMTAL ISLKLGLP
Sbjct: 198 VMTALNSGSSQDNDDGSDISLKLGLP 223
>Os02g0761000 Similar to Transcription factor MADS55
Length = 228
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/208 (63%), Positives = 148/208 (71%), Gaps = 4/208 (1%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNLG 77
QVTFSKRRRGLFKKAEE FSSTGKLS FASS+MNEIIDKY THS NLG
Sbjct: 18 QVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLG 77
Query: 78 KTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGLQR 137
K + QPS+DLNLEHSK + LNEQLAEASL+LRQMR QQ+EKNLEAGL R
Sbjct: 78 KAE-QPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHR 136
Query: 138 VLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSES 197
V+ TKDQQFM++ISELQRK QLAEENM+LR+Q+ Q+ A V DTEN +TE GQSSES
Sbjct: 137 VMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQVVDTENFVTE-GQSSES 195
Query: 198 VMTALXXXXXXXXXXX--XXISLKLGLP 223
VMTAL +SLKLGLP
Sbjct: 196 VMTALHSGSSQSQDNDDGSDVSLKLGLP 223
>Os03g0186600 Transcription factor, MADS-box domain containing protein
Length = 248
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 129/212 (60%), Gaps = 13/212 (6%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNLG 77
QVTFSKRRRGLFKKAEE FS+TGKL QFAS++M +IID+Y +HSK L
Sbjct: 37 QVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQ 96
Query: 78 KTDKQPS-IDLNLEHSK-CSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGL 135
+ +PS +DL E S C+ L E+LAE SL+LRQMR Q++EK+LE+GL
Sbjct: 97 RA--EPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGL 154
Query: 136 QRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPT-----AGLAVPDTENVLTE 190
VL TK ++ + EI L+RK +QL EEN+RL++Q+ ++ G PD+E ++ E
Sbjct: 155 GSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQVSRMSRMEEMQPG---PDSE-IVYE 210
Query: 191 DGQSSESVMTALXXXXXXXXXXXXXISLKLGL 222
+GQSSESV A SL+LGL
Sbjct: 211 EGQSSESVTNASYPRPPPDNDYSSDTSLRLGL 242
>Os02g0579600 Transcription factor MADS27
Length = 240
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNLG 77
QVTFSKRR G+FKKA+E FSSTG+L +++S++M +ID+Y SK+
Sbjct: 18 QVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGK-SKDEQ 76
Query: 78 KTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGLQR 137
+ P+ +L + +SL +QL RQ+ Q +E LE L+
Sbjct: 77 QAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRS 136
Query: 138 VLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 171
V KD + EI EL RKG + +ENM L ++
Sbjct: 137 VRTKKDHVLIDEIHELNRKGSLVHQENMELYKKI 170
>Os02g0731200 Transcription factor MADS57
Length = 241
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNLG 77
QVTFSKRR GL KKA+E FSSTG+L +F+S+NM +ID+YT + L
Sbjct: 18 QVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEEL- 76
Query: 78 KTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGLQR 137
+ ++ + + +SL +QL +Q+ Q +E LE L+
Sbjct: 77 -LGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRN 135
Query: 138 VLCTKDQQFMQEISELQRKGIQLAEENMRL 167
+ KD EI EL KG + +EN+ L
Sbjct: 136 IRMRKDNLLKSEIEELHVKGSLIHQENIEL 165
>Os08g0431900 Transcription factor MADS23
Length = 159
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNLG 77
QVTFSKRR GLFKKA E FSST +L FASS+M II++Y ++
Sbjct: 18 QVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPH 77
Query: 78 KTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGLQR 137
+T S + L + +SL +QL RQ+ Q +E LE L+
Sbjct: 78 QT-MNASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKN 136
Query: 138 VLCTKDQQFMQEISELQRKGI 158
+ KD M +I EL RK +
Sbjct: 137 IRLRKDNVMMDQIQELSRKVV 157
>AF109153
Length = 249
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNL- 76
QVTFSKRR GL KKA E FSS GKL +F S+ +N+ ++KY + N
Sbjct: 18 QVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQ 77
Query: 77 GKTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGLQ 136
G + + + S L +L R M QQ+EK LE L
Sbjct: 78 GSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLS 137
Query: 137 RVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 171
+ K Q M+++ +L+RK QL E N +L++++
Sbjct: 138 QARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172
>Os04g0580700 MADS box transcription factor MADS17
Length = 254
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 18 QVTFSKRRRGLFKKAEEXXXXXXXXXXXXXFSSTGKLSQFASSNMNEIIDKYTTHSKNL- 76
QVTFSKRR GL KKA E FSS GKL +F S+ +N+ ++KY + N
Sbjct: 23 QVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQ 82
Query: 77 GKTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRXXXXXXXXXXXXQQMEKNLEAGLQ 136
G + + + S L +L R M QQ+EK LE L
Sbjct: 83 GSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLS 142
Query: 137 RVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 171
+ K Q M+++ +L+RK QL E N +L++++
Sbjct: 143 QARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 177
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.125 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,345,777
Number of extensions: 121474
Number of successful extensions: 479
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 18
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)