Os02g0761000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor MADS55.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0761000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Transcription factor MADS55.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.25 | 0.189 | 12.7 | -0.0483 | 0.658 | -0.445 | -0.102 | -0.124 | 0.0871 | 2.83 | 85.02 | 1364 | -- | -- |
| 16.27 | 0.188 | 12.7 | -0.041 | 0.659 | -0.453 | -0.115 | -- | 0.0889 | 2.83 | 85.13 | 1356 | -- | -- |
| 16.29 | 0.188 | 12.7 | -0.0485 | 0.658 | -0.447 | -- | -0.143 | 0.0877 | 2.81 | 85.2 | 1364 | -- | -- |
| 16.31 | 0.188 | 12.7 | -0.0343 | 0.656 | -0.456 | -- | -- | 0.0896 | 2.81 | 85 | 1364 | -- | -- |
| 23.78 | 0.227 | 12.7 | -0.0665 | -- | -0.816 | -- | 0.469 | 0.115 | -- | 98.24 | 120 | -- | -- |
| 21.14 | 0.216 | 12.7 | -0.0994 | 0.613 | -- | -0.2 | -- | 0.0967 | 2.87 | -- | -- | -- | -- |
| 21.27 | 0.216 | 12.7 | -0.0947 | 0.612 | -- | -- | -- | 0.0979 | 2.83 | -- | -- | -- | -- |
| 24.13 | 0.229 | 12.7 | -0.0726 | -- | -0.791 | -- | -- | 0.114 | -- | 122.7 | 111 | -- | -- |
| 16.34 | 0.188 | 12.7 | -- | 0.656 | -0.456 | -- | -- | 0.0916 | 2.81 | 85 | 1360 | -- | -- |
| 42.94 | 0.306 | 12.7 | -0.0686 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 21.51 | 0.217 | 12.7 | -- | 0.61 | -- | -- | -- | 0.108 | 2.83 | -- | -- | -- | -- |
| 24.27 | 0.229 | 12.7 | -- | -- | -0.79 | -- | -- | 0.122 | -- | 134.6 | 111 | -- | -- |
| 43.06 | 0.306 | 12.7 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 2 | 15.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 20 | 16.12 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 33 | 16.16 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 37 | 16.17 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 51 | 16.19 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 52 | 16.19 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 70 | 16.21 | humidity | 90 | 1440 | < th | dose dependent | sin | 19 | NA |
| 98 | 16.24 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 99 | 16.24 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 131 | 16.26 | humidity | 80 | 1440 | < th | dose dependent | sin | 16 | NA |
| 214 | 16.30 | humidity | 80 | 1440 | < th | dose dependent | rect. | 14 | 19 |
| 233 | 16.31 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 309 | 16.34 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 532 | 16.43 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 862 | 16.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 963 | 16.59 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |