Os08g0431900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor MADS23.
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Os08g0431900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor MADS23.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.99 | 0.548 | 3.36 | 0.204 | 0.0277 | -0.941 | -0.353 | -3.2 | -0.0601 | 8.61 | 996.7 | 4998 | -- | -- |
| 140.82 | 0.553 | 3.36 | 0.19 | 0.037 | -0.818 | -0.327 | -- | -0.0542 | 8.42 | 996.7 | 5761 | -- | -- |
| 136.38 | 0.544 | 3.36 | 0.192 | 0.0291 | -0.917 | -- | -3.1 | -0.0606 | 8.39 | 996.7 | 5060 | -- | -- |
| 141.11 | 0.553 | 3.37 | 0.176 | 0.0366 | -0.801 | -- | -- | -0.0659 | 8.1 | 996.6 | 5761 | -- | -- |
| 136.43 | 0.544 | 3.36 | 0.192 | -- | -0.92 | -- | -3.11 | -0.0602 | -- | 996.7 | 5059 | -- | -- |
| 147.01 | 0.568 | 3.37 | 0.21 | 0.0481 | -- | -0.284 | -- | -0.101 | 8.71 | -- | -- | -- | -- |
| 147.28 | 0.568 | 3.37 | 0.201 | 0.0493 | -- | -- | -- | -0.101 | 8.43 | -- | -- | -- | -- |
| 141.18 | 0.553 | 3.37 | 0.175 | -- | -0.808 | -- | -- | -0.0641 | -- | 996.6 | 5761 | -- | -- |
| 141.89 | 0.555 | 3.37 | -- | 0.0388 | -0.808 | -- | -- | -0.0817 | 7.35 | 996.8 | 5766 | -- | -- |
| 147.41 | 0.567 | 3.37 | 0.201 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 148.34 | 0.57 | 3.38 | -- | 0.0503 | -- | -- | -- | -0.123 | 8.13 | -- | -- | -- | -- |
| 141.97 | 0.555 | 3.37 | -- | -- | -0.811 | -- | -- | -0.0828 | -- | 996.8 | 5766 | -- | -- |
| 148.48 | 0.569 | 3.38 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.65 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 2 | 135.71 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 8 | 13 |
| 4 | 135.84 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 45 | 135.94 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 101 | 136.12 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 102 | 136.15 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 103 | 136.16 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 132 | 136.50 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 154 | 136.68 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 211 | 137.28 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 18 | 22 |
| 225 | 137.73 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 5 | 10 |
| 301 | 137.91 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 304 | 137.91 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 328 | 137.97 | atmosphere | 995 | 4320 | < th | dose dependent | sin | 3 | NA |
| 336 | 137.99 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 411 | 138.13 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 420 | 138.16 | atmosphere | 995 | 4320 | > th | dose independent | sin | 6 | NA |
| 452 | 138.28 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 468 | 138.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 3 |
| 486 | 138.40 | atmosphere | 995 | 4320 | < th | dose independent | sin | 6 | NA |
| 488 | 138.41 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 508 | 138.64 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 515 | 138.69 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 534 | 138.75 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 23 | 3 |
| 537 | 138.78 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 546 | 138.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 571 | 138.88 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 588 | 138.91 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 603 | 138.93 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 643 | 138.97 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 23 | 15 |
| 729 | 139.09 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 731 | 139.09 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 743 | 139.10 | atmosphere | 995 | 4320 | < th | dose dependent | no | NA | NA |
| 790 | 139.16 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 792 | 139.16 | humidity | 80 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 793 | 139.17 | atmosphere | 1000 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 802 | 139.21 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 815 | 139.28 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 821 | 139.33 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 824 | 139.33 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 826 | 139.34 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 841 | 139.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 862 | 139.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 870 | 139.41 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 875 | 139.42 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 882 | 139.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 912 | 139.47 | humidity | 70 | 43200 | < th | dose dependent | sin | 5 | NA |
| 917 | 139.48 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 924 | 139.49 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 24 | 14 |
| 947 | 139.52 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 975 | 139.56 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 1 |