Os06g0217300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor MADS55.
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Os06g0217300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor MADS55.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.06 | 0.258 | 14 | 1.59 | 1.07 | 0.292 | 0.551 | -1.59 | 0.241 | 5.96 | 9.972 | 21279 | -- | -- |
| 34.75 | 0.275 | 13.9 | 1.5 | 1.03 | 0.437 | 0.64 | -- | 0.17 | 5.95 | 19.13 | 47400 | -- | -- |
| 29.34 | 0.252 | 14 | 1.64 | 1.04 | 0.396 | -- | -1.44 | 0.256 | 5.94 | 37.98 | 25679 | -- | -- |
| 34.26 | 0.273 | 13.9 | 1.37 | 1.09 | 0.605 | -- | -- | 0.153 | 6.03 | 39.71 | 45856 | -- | -- |
| 89.1 | 0.44 | 14 | 1.56 | -- | 0.441 | -- | -1.48 | 0.175 | -- | 42.18 | 44116 | -- | -- |
| 39.59 | 0.295 | 13.9 | 1.75 | 1.08 | -- | 0.47 | -- | 0.24 | 5.99 | -- | -- | -- | -- |
| 40.13 | 0.297 | 13.9 | 1.76 | 1.08 | -- | -- | -- | 0.238 | 6.02 | -- | -- | -- | -- |
| 93.82 | 0.451 | 13.9 | 1.42 | -- | 0.588 | -- | -- | 0.172 | -- | 39.64 | 45376 | -- | -- |
| 65.23 | 0.376 | 13.9 | -- | 1.04 | 1.44 | -- | -- | 0.151 | 6.02 | 40 | 45904 | -- | -- |
| 100.93 | 0.469 | 13.9 | 1.79 | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
| 121.45 | 0.516 | 14 | -- | 1.11 | -- | -- | -- | 0.0425 | 5.94 | -- | -- | -- | -- |
| 107.94 | 0.484 | 14 | -- | -- | 1.7 | -- | -- | -0.172 | -- | 49.99 | 47520 | -- | -- |
| 185.26 | 0.635 | 14 | -- | -- | -- | -- | -- | 0.0643 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 3 | 28.20 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 4 | 28.24 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 7 | 28.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 9 | 28.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 10 | 28.40 | radiation | 10 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 16 | 28.43 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 17 | 28.43 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 23 | 28.46 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 26 | 28.46 | radiation | 40 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 42 | 28.53 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 43 | 28.53 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 74 | 28.57 | radiation | 10 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 77 | 28.58 | radiation | 10 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 78 | 28.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 134 | 28.60 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 141 | 28.61 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 158 | 28.62 | radiation | 40 | 43200 | > th | dose independent | sin | 21 | NA |
| 193 | 28.64 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 383 | 28.66 | radiation | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 395 | 28.66 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 396 | 28.66 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 446 | 28.68 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 660 | 28.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 668 | 28.77 | humidity | 60 | 43200 | < th | dose dependent | sin | 2 | NA |
| 715 | 28.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 756 | 28.80 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 815 | 28.81 | radiation | 40 | 43200 | < th | dose dependent | sin | 4 | NA |
| 904 | 28.83 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 945 | 28.84 | radiation | 10 | 43200 | > th | dose dependent | sin | 4 | NA |
| 993 | 28.85 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 1 |