Os02g0731200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor MADS57.
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Os02g0731200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor MADS57.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.71 | 0.414 | 10.7 | -0.865 | 0.423 | -1.76 | -0.27 | -1.39 | -0.496 | 0.162 | 19.4 | 270 | -- | -- |
| 78.82 | 0.413 | 10.7 | -0.635 | 0.399 | -1.79 | -0.227 | -- | -0.441 | 23.8 | 21.2 | 250 | -- | -- |
| 77.94 | 0.411 | 10.7 | -0.84 | 0.434 | -1.75 | -- | -1.31 | -0.5 | 0.45 | 19.14 | 270 | -- | -- |
| 78.96 | 0.414 | 10.7 | -0.62 | 0.4 | -1.78 | -- | -- | -0.431 | 0.00933 | 21.2 | 252 | -- | -- |
| 84.39 | 0.428 | 10.7 | -0.704 | -- | -2.03 | -- | -0.891 | -0.433 | -- | 19.39 | 158 | -- | -- |
| 130.73 | 0.536 | 10.7 | -1 | 0.941 | -- | 1.02 | -- | -0.733 | 3.39 | -- | -- | -- | -- |
| 133.74 | 0.542 | 10.8 | -1.02 | 0.942 | -- | -- | -- | -0.738 | 3.12 | -- | -- | -- | -- |
| 84.91 | 0.429 | 10.7 | -0.564 | -- | -2.02 | -- | -- | -0.394 | -- | 20.36 | 151 | -- | -- |
| 87.79 | 0.436 | 10.7 | -- | 0.374 | -2.02 | -- | -- | -0.328 | 23.7 | 19.15 | 252 | -- | -- |
| 184.31 | 0.634 | 10.8 | -0.981 | -- | -- | -- | -- | -0.713 | -- | -- | -- | -- | -- |
| 161.24 | 0.594 | 10.7 | -- | 0.922 | -- | -- | -- | -0.624 | 3.12 | -- | -- | -- | -- |
| 92.45 | 0.448 | 10.7 | -- | -- | -2.22 | -- | -- | -0.308 | -- | 19.02 | 162 | -- | -- |
| 209.71 | 0.676 | 10.7 | -- | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 2 | 76.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 10 | 77.93 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 19 | 78.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 21 | 78.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 43 | 79.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 65 | 80.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 91 | 81.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 111 | 82.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 112 | 82.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 129 | 82.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 136 | 82.79 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 137 | 82.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 139 | 82.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 145 | 82.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 154 | 82.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 166 | 83.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 217 | 83.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 269 | 83.74 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 276 | 83.77 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 294 | 83.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 308 | 83.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 310 | 83.95 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 374 | 84.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 377 | 84.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 404 | 84.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 436 | 84.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 463 | 84.49 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 467 | 84.50 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 493 | 84.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 558 | 84.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 574 | 84.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 583 | 84.71 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 597 | 84.73 | humidity | 90 | 43200 | < th | dose independent | sin | 9 | NA |
| 604 | 84.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 662 | 84.86 | humidity | 90 | 43200 | > th | dose independent | sin | 9 | NA |
| 764 | 85.02 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 785 | 85.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 804 | 85.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 867 | 85.17 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 899 | 85.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 16 |